KEGG   Coturnix japonica (Japanese quail): 107322520Help
Entry
107322520         CDS       T04297                                 

Gene name
LIG3
Definition
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
cjo  Coturnix japonica (Japanese quail)
Pathway
cjo03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:cjo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    107322520 (LIG3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cjo03400]
    107322520 (LIG3)
Enzymes [BR:cjo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107322520 (LIG3)
DNA repair and recombination proteins [BR:cjo03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     107322520 (LIG3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 107322520
NCBI-ProteinID: XP_015736110
LinkDB All DBs
Position
19
AA seq 966 aa AA seqDB search
MLAALCRAVRVLSLCWPTLRSCSRYRLLLCGAVRCVSFNPCVGAARLLVPLSAHTGLGRA
CSGDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNPFTESGGDMKEWYHVKCM
FEKLEKARASTKKIEDITDLEGWEELQDGEKELISNLISEATSKAASTPKKKATVQAKLT
ATGQITSPQKDPLANANPKKFSGFTAKPKNSEEVSANSSHNSSLSAKNCDPKHKDCLLRE
FRKLCAMVADKPSYNVKTQIIQDFLKKGSGGDGFHGDVYLTIKLLLPGIIKIVYNLNDKQ
IVKLFSRIFNCSQEEMVRDLEQGDVSETIRLFFEQSKSCPPAAKSLLTIQEVDEFLIQLS
KLTKEDDQQSVLQDITRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDALDPNAYEAFKASR
NLQDVVERVLKNQQDAEKTPGVKRTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYA
EIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFPGGHSMILDSEVLLID
NKTGKPLPFGSLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLRERRKFLHDNMVEIP
NRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDIKGNYEPGKRHWLKVKKDYLNEGA
MADTADLVVLGAFYGKGSKGGMMSIFLMGCYDPKSEKWCTVTKCAGGHDDATLARLQTEL
DMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKAPVWEITGAEFSKAEAHTADGISIRFP
RCTRIRDDKDWKAATNLPQLKELYQLSKEKADFSVVAGEEEESTAGSSGENEGNSRSSTP
HKMTKTPPKSPAKAMKPEGTKAVAESPQKAEEKRGEKRKASEIEDNGKKLLLDIFTGVKL
YLSPTVKDYKKIQRYFIAYDGDLVSEYDAASATHIIGDIDENPGAKRVSPKWIWECIRKR
RLVALC
NT seq 2901 nt NT seq  +upstreamnt  +downstreamnt
atgctggctgctctgtgtcgtgccgttcgtgttctgtcgctgtgctggcccacactccgc
tcgtgctctcggtaccggctgctgctttgcggggctgtgcgctgtgtgagtttcaatcct
tgtgttggtgctgctcggctcctcgtccctctgtccgcacacacggggctgggccgggcc
tgcagtggggatatggccgagcagagatactgcgtggattacgccaaacgaggcacggcc
ggatgcaagaagtgcaaggagaagatagtgaaggggatggtgcgtatagggaagatcgtt
cccaaccctttcacggagtctggtggggatatgaaggagtggtaccacgtcaagtgtatg
tttgagaagttggagaaagctcgggccagcactaagaaaattgaagatatcacggatttg
gaagggtgggaagagctgcaggatggggagaaagagctcatcagcaacctcatctcagaa
gctacgtccaaagctgcgagtacaccgaagaaaaaagcaacagttcaggctaagctcaca
gccacaggacaaataaccagcccccagaaggacccattggctaatgccaatccgaagaag
ttctctggcttcacagccaagcccaagaattctgaagaagtgtccgcaaactcttcccac
aactccagcctgtctgcaaagaactgtgatcccaagcacaaagactgtttgctgcgagag
ttcaggaagctctgtgctatggtggctgacaagcctagttacaatgtgaaaacacagatc
atccaggacttcctgaagaagggaagtggaggagatggttttcatggcgacgtatacctg
accattaagctgctcttaccaggcatcattaaaattgtttacaacttgaatgataagcag
attgtaaagctgttcagtaggatttttaactgcagccaagaagaaatggtccgggacctg
gaacagggagatgtttctgagacaatacgcctcttctttgagcagagcaaatcttgtcct
cctgcagccaaaagcctcctgaccatccaagaggtagatgagtttctcatccagctatct
aagcttactaaggaagatgaccagcaaagtgtgctgcaagatatcactcgcagatgtaca
ggcaacgacctgaaatgcatcatcaggctaattaagcatgacttgaaaatgaacgctggc
gcaaagcatgtgttggatgctttggatccaaatgcttacgaggcgttcaaagcatcacgc
aacctgcaggatgtggtggagagagtcctgaagaaccagcaggatgctgagaagacgcca
ggtgtgaagcgaacgctcagcgtgcaggcctctctgatgacccctgttcagcctatgctg
gctgaagcctgcaagtcaatagagtatgccatgaagaagtgccccaatggcatgtatgca
gagattaaatacgatggtgagagggtgcaggtccataaaaacggagatcacttcagttac
ttcagccggagcctcaaacccgtccttcctcacaaagtagctcactttaaggacttcatt
ccccaggctttccctggtgggcacagtatgatcctggattcagaagttcttctaattgat
aataaaactggcaaaccacttccttttggatctcttggtgtacataagaaagctgctttc
caagatgccaacgtctgcttgtttgtgtttgactgcatctatttcaacgacgtcagcctg
atggacaggcctctgcgtgagcgtcgtaaatttctacatgataacatggttgaaatcccc
aaccggatccttttctcagagatgaagcacgtcacaaaagcttcagatctagcagatatg
atcacccgagtcatccgtgagggactggaaggactggtgttgaaagatataaagggtaat
tatgaaccaggaaagcggcactggctgaaagtgaaaaaggactacctgaatgagggtgca
atggctgacacagctgacttggtggtgctgggagctttctatgggaaaggcagtaaaggt
gggatgatgtccatcttcctcatgggctgctatgaccccaagagcgagaagtggtgcact
gtgaccaagtgtgctggtggccacgacgacgccaccttggcccgtctgcaaacagagctg
gacatggtgaagatcagcaaggatcccagtaaaatcccaagctggctgaaaattaacaaa
atctactacccagacttcattgtcccagatccaaagaaagccccagtgtgggagattaca
ggggctgagttctccaaagctgaagcccacactgcagatgggatctccattcgcttccct
cgctgcactcgcattcgagatgacaaggactggaaggcagccaccaacctcccgcagctg
aaggagctgtaccaactcagcaaagaaaaggctgatttcagtgttgttgctggggaggag
gaggagtccacagctggcagcagtggagagaatgagggaaattccaggtcttccacacca
cacaagatgactaaaactcctcctaagtcccctgcaaaagccatgaaaccagaaggcacc
aaagcagtcgctgaatcccctcaaaaggcagaggagaaacgaggagagaagcgaaaagca
tctgagatagaagacaatggaaagaagctgctgctggacatattcactggtgtgaagctc
tacttgtcacccactgtaaaggactacaagaaaatccagcgctacttcatagcatacgat
ggtgatcttgtgtcagagtacgacgcagcctcagcaacacacattattggggacattgat
gagaatcctggtgctaagcgggtgtctcccaaatggatctgggaatgcatccggaaacgg
agactggtggccctgtgctag

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