Campylobacter lari subsp. concheus LMG 11760: CONCH_0016
Help
Entry
CONCH_0016 CDS
T03557
Name
(GenBank) mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cll
Campylobacter lari subsp. concheus LMG 11760
Pathway
cll03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cll00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CONCH_0016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cll03019
]
CONCH_0016
Messenger RNA biogenesis [BR:
cll03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CONCH_0016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AJC88471
LinkDB
All DBs
Position
complement(14715..16673)
Genome browser
AA seq
652 aa
AA seq
DB search
MSEENKTQEQNKTKRFNKFRNKRKKDSQNQEQNSEIKNGTKIENTQTEAIEEKKKKKKNR
NLPSKLSGNEEWQIELAKSIEANKIMHELRLHPLKHNNSSEHKIRITPLGGLGEIGGNIT
VFETNNDAIIVDIGMSFPDGTMHGVDIIIPDFDYVRKIKNKIRAIIITHAHEDHIGAVPY
FFKEFQFPIYATPLALGMISNKFEEHGLKAERKWFRPITKRQIYEIGEFNLEWIHITHSI
IDACALAIKTKAGTIIHTGDFKIDQTPIDGYPTDLSRLAQYGEEGVLCLLSDSTNSYKEG
YTKSESSVGPTFDQIFAKTKGRVIMSTFSSNIHRVYQAISYGLKYGRKVCVIGRSMERNL
YTTMELGYIKLDRKIFIDADEVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKP
SDQVIISAKAIPGNEANVSAVLDFLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLVKP
KFFLPVHGEYNHINKHKETALKCGIPERNIYLMSDGDQVELCQKYIKRVKTVKTGKVFVD
NQINKQIADDVVIDRQKLADSGIVVIIAQLDKASKTLINKPRVFSYGLVADKQDGAFSKE
MSDVLSQFFPNVKDEILDNPKVLEAQIRQVLRKHIFRKIKKYPTIVPTIFVM
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagaaaacaaaactcaagagcaaaataaaactaaaagatttaataaatttaga
aacaaaagaaaaaaagattcgcaaaatcaagagcaaaatagcgaaattaaaaacggaaca
aaaatagaaaatactcaaactgaagctatcgaagaaaaaaagaaaaagaaaaaaaataga
aatttaccttctaaattaagtggtaatgaagaatggcaaatagaacttgctaaaagcata
gaagctaataaaatcatgcacgagctaagactccaccctttaaaacacaacaactcaagc
gaacataaaattcgtattacacctttgggtggacttggagaaatcggtggaaatatcact
gtttttgaaaccaacaacgatgcaattatcgttgatataggtatgagttttccagatgga
accatgcatggagtagatattatcatacctgattttgactatgtaagaaagattaaaaac
aaaattcgcgctatcatcatcactcatgctcatgaagatcacattggtgctgtaccgtat
tttttcaaagaatttcaatttcctatctacgcaacacctttagcactaggtatgatttca
aataaatttgaagaacatggtttaaaagctgagcgtaaatggtttaggcctataacaaaa
agacaaatttatgaaataggtgaatttaatttagaatggattcacataacccactctatc
atcgatgcttgtgctttagctattaaaactaaagcagggactatcattcacactggcgat
tttaaaatagatcaaacaccaattgatggttatccaacagatttaagtcgtttagctcaa
tatggcgaagaaggcgtactttgtcttttaagtgatagtacaaactcatataaagaaggt
tatacaaaaagtgaaagttcagtaggtcctacttttgatcaaatttttgccaaaactaaa
ggcagggtgattatgagcacctttagttctaatatccaccgtgtatatcaagctattagc
tatggtttaaaatatggtagaaaagtgtgtgttataggacgctctatggaaagaaatctc
tataccactatggaacttggctatattaaacttgatagaaaaattttcattgacgctgat
gaagtaagcaaatacaaagacaatgaagtgctaattgttaccacaggaagtcaaggtgag
actatgagtgccttatatagaatggcaactgatgaacataaatttatcaaaatcaaacct
agcgatcaagttatcatttcagctaaagcaataccaggcaatgaagcaaatgtttctgct
gtgcttgattttcttttaaaagcaggggctaaagtagcttatcaagaatttagtgaaatc
catgtaagcggacatgctagtatagaagagcaaaaactcatgctaactttagtaaaacct
aaatttttcttaccagtgcatggagagtataatcatatcaataagcacaaagaaactgct
ctaaaatgtggcatacctgaaagaaatatctacttaatgagtgatggagatcaagtagag
ctttgccaaaaatacatcaaacgtgtaaaaacagttaaaacaggaaaagtgtttgtagac
aatcaaatcaacaaacaaatcgcagatgatgtggtaattgatagacaaaaactagcagat
agtggtatagttgttatcattgcccagcttgataaagcaagtaaaacactgattaataaa
ccaagagtatttagttatggcttggtagctgataaacaagatggagcattctcaaaagaa
atgagcgatgttttaagtcaatttttccctaatgtaaaagatgaaattttagataatcca
aaagttttagaagctcaaattagacaagtactaagaaaacatatttttagaaaaattaaa
aaatatccaaccatagtaccaactatttttgtgatgtaa
DBGET
integrated database retrieval system
