Clostridium bornimense: CM240_1857
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Entry
CM240_1857 CDS
T03165
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
clt
Clostridium bornimense
Pathway
clt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CM240_1857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clt03019
]
CM240_1857
03009 Ribosome biogenesis [BR:
clt03009
]
CM240_1857
Messenger RNA biogenesis [BR:
clt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CM240_1857
Ribosome biogenesis [BR:
clt03009
]
Prokaryotic type
rRNA helicases
CM240_1857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
SecA_DEAD
MptE-like
SWI2_SNF2
Helicase_RecD
ERCC3_RAD25_C
Flavi_DEAD
SMC_N
Motif
Other DBs
NCBI-ProteinID:
CDM69015
UniProt:
W6SH62
LinkDB
All DBs
Position
rep1:2038017..2039168
Genome browser
AA seq
383 aa
AA seq
DB search
MKNNFNELNLDSNIVLGLEKQGITTPTEIQSLTIPNVLENKDIIAEAYTGSGKTLAFVAP
LFQKIDTSKRESQVLILAPTHELVIQITEQIKLLAKNSEIPVTSLSIIGEASIEKQIKKI
KEIKPHIVVGSAGRILDLIKKKKFKPHTLKTIVIDEADSLLVEEKISPIKEIIKTTMRDR
QLMIFSATINDKVLASATELMKDPVILKSKAKVALNPNITHMCILSDRKDKFETLRKLIN
ATKPKKAIVFLNKGHEIEFITQKLNYHKKNAIGIYGNMTKEQRKNALDGFRNGKYNILVS
SDLSARGLDISDVTHIFNLDFPVKAKEYLHRAGRTARGTASGTCISIVNERDLAAIRIYE
REFNIEIEPKVLFEGKLYNPKDL
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaataattttaatgaactaaatttagattcaaatatagtattaggtctagaaaaa
caaggtataactacaccaacagaaatacaatctcttacaattcctaatgttttagaaaat
aaagatatcattgctgaagcatatactggtagcggaaaaactttagctttcgttgctcct
ttatttcagaaaatagatacttctaagagagagtcacaagttcttatcttagctccaact
catgagttagttattcaaataacggaacaaattaagttgctagccaaaaattctgaaatt
cctgtcacttcacttagtataattggagaagctagtattgaaaagcaaataaagaaaatt
aaagaaattaaacctcatatagtagttggttcagctggaagaatattagatcttataaag
aaaaagaaatttaaacctcatactcttaaaactattgtaatagatgaagctgattctctt
ctagtagaagaaaaaatttcacctataaaagaaattattaaaactactatgcgagaccgt
caacttatgattttctctgctacaataaatgataaagtattagcttcagcaacagaactt
atgaaagatcctgttattttaaaatcaaaagcaaaagtggccttaaatcctaacataact
cacatgtgtattttaagtgatagaaaagataaatttgaaacattgagaaagcttataaat
gcaacaaaacctaaaaaagctattgtattccttaataaaggtcacgaaattgaatttata
acacaaaaattaaattatcataaaaagaatgctattggaatctatggaaatatgactaaa
gagcaaagaaaaaatgctttagatggctttagaaacggcaaatataacattttagtatct
tctgatttatcagcaagaggtcttgatatttcagatgtaactcatatatttaacttagac
tttcctgtgaaagcaaaggaatatctacatagagcaggaagaactgcaagaggtactgct
tctggaacttgcatatctattgtaaatgaacgagaccttgctgccataagaatttacgaa
agagaatttaatattgaaatagaaccaaaagtactatttgaaggtaaattatataatcca
aaagatttgtaa
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