KEGG   Columba livia (rock pigeon): 102083602Help
Entry
102083602         CDS       T02912                                 

Gene name
LIG3
Definition
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
clv  Columba livia (rock pigeon)
Pathway
clv03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:clv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    102083602 (LIG3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:clv03400]
    102083602 (LIG3)
Enzymes [BR:clv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102083602 (LIG3)
DNA repair and recombination proteins [BR:clv03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     102083602 (LIG3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 102083602
NCBI-ProteinID: XP_005502035
UniProt: A0A2I0M1W3
LinkDB All DBs
Position
Unknown
AA seq 994 aa AA seqDB search
MRRGCRTLAQAAWTLRRGTGLFSPHIRVSLPRTHLCQELPRASPSPWHQLLLRAVSLQSA
GRNQSAGAGVCHFSRLLNIWFRQACTAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMV
RIGKIVPNPFTESGGDMKEWYHVKCIFEKLEKARATTKKIEDITDLEGWEELQDGEKELI
NKHISEANSKAGSTPKKKVIVQAKLTATGQLTTKDPLALITPSPKKFSGFTAKPKNSEDV
SANSSHKSSLSAKQCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLKKGSGGDGF
HGDVYLTIKLLLPGVIKIVYNLNDKQIVKLFSRIFNCSQEEMVRDLEQGDVSETIRLFFE
QSKTCPPAAKSLLTIQEVDEFLFRLSKLTKEDDQQSVLQQITRRCTGNDLKCIIRLIKHD
LKMNAGAKHVLDALDPNAYEAFKASRNLQDVVERVLKNQQEAEKMPGLKRTLSVQASLMT
PVQPMLAEACKSIDYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVA
HFKDFIPQAFPGGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIY
FNDVSLMDRPLCERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVL
KDLKSNYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPK
SEKWCTVTKCSGGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKA
PVWEITGAEFSKAEAHTADGISIRFPRCTRIRDDKDWKTATNLQQLKELYQLSKEKADFH
VAAGEEDESTAGSSGENDGNSRSSTPHSAVKTPPSKSPAKAQKPEESKALIESPQKSEEK
RGQKRKASEMMEDNGKKTLLDIFTGVKLYLSPSVKDFDKIRRYFIAYDGDLVPEFDTASA
THVIGDIDDNPGAMRVSPDWIWKCIRKRRLVAPC
NT seq 2985 nt NT seq  +upstreamnt  +downstreamnt
atgcgcaggggctgcaggactctcgcacaggctgcctggacactccgcaggggcacagga
cttttctccccacacatacgggtctccctgccaagaacccacctttgccaagaactcccc
agggccagccccagtccctggcaccagctgctgttacgggctgtatctctccagtctgca
ggcagaaaccagagcgctggtgctggggtttgccatttctccaggcttttgaacatttgg
tttcgccaagcttgtacagccgcagaggacatggcagaacagaggtactgcgtggactat
gccaagcgcggcacggcaggctgcaagaagtgcaaagagaagatcgtgaagggaatggtg
cgcattggaaagatcgttcccaatcctttcaccgagtctggcggggacatgaaagaatgg
taccacgtgaagtgcatatttgagaagctagagaaggcccgggccaccaccaagaaaatt
gaagacatcacagacttggaaggatgggaggagttacaagatggggagaaggagttaatc
aacaagcacatctcagaagctaattccaaggctggaagtacaccgaagaaaaaagtgata
gtccaagctaagctcactgccacaggacaattaactacaaaagatccattagctctcatc
actccatcacccaagaagttctctggctttacagccaagccaaaaaattcagaagatgtc
tctgcaaactcttcccacaagtctagcctctccgcaaaacagtgcgatccaaagcacaag
gactgcttgctgcgagagttcaggaagctctgtgccatggttgctgaaaagcccagctac
aacgtgaagacgcagatcatccaggatttcctgaagaagggatctggaggagatggtttt
catggtgatgtctaccttaccattaagctgctgttaccaggagtcattaaaattgtttac
aacttgaatgataagcagattgtaaagctgtttagtaggatttttaactgcagccaagaa
gaaatggtccgagacctcgaacagggagatgtttctgagaccatacgcctcttcttcgaa
cagagcaagacttgtcctccagcagccaaaagtctcctgaccatccaagaggtagatgaa
ttcctgttccggctgtcaaagcttactaaggaagacgaccagcaaagtgtgctgcagcag
atcactcgcagatgtacgggtaatgacctgaaatgcatcatcaggctaatcaagcatgac
ttgaaaatgaatgccggagcaaaacacgtgttggatgctttggatcccaatgcttacgag
gcgttcaaagcatcacgcaacctccaggatgtggtggagcgagtgctgaagaaccagcag
gaggctgagaagatgccggggctgaagcggaccctgagcgtgcaggcgtctctgatgacc
ccggttcagcccatgctggctgaagcttgcaagtcgatcgattatgccatgaagaagtgc
ccaaacggcatgtatgcagagatcaaatatgatggcgagcgggtgcaggtccataaaaat
ggagatcatttcagctacttcagcagaagcctcaaacctgtcctccctcacaaagtagcc
cactttaaggacttcatcccccaggctttccctggtgggcaaagcatgatcctggactca
gaagttcttctgattgataacaaaactggcaagccacttccttttgggactctcggtgtg
cacaagaaagctgctttccaagatgccaacgtttgtttgtttgtgtttgactgcatctac
ttcaatgacgtcagcctgatggacaggcctttgtgtgagcgccgtaaatttctccacgat
aacatggttgaaatcccgaaccggattctcttctcggagatgaagcacgtcacgaaagct
tcagatctggcagatatgatcacccgagtcatccgtgagggactggaagggctggtgttg
aaagatctaaagagtaattatgaaccaggaaaacggcattggctgaaagtgaaaaaggac
tacctaaatgagggtgcaatggcggacacagcagacctggtggtgctgggagctttctat
ggacaaggcagtaaaggtgggatgatgtccatcttcctcatgggctgctacgatcccaag
agtgagaagtggtgcactgtgaccaagtgttccggtggccacgatgacgccaccttggcg
cgtctgcagacagagctggacatggtgaagatcagcaaggatcccagtaaaattccaagg
tggctaaaaattaacaaaatctactacccagacttcatcgtcccagatccaaagaaagca
ccggtgtgggagatcacaggcgctgaattctctaaagctgaagcccacactgcagacggg
atctccattcgcttccctcgctgcacccgcattcgagatgacaaagactggaagacagcc
accaacctccagcagctgaaggagctgtaccagctctccaaagagaaggctgatttccat
gttgctgctggggaggaagacgagtccacagctggcagcagcggagagaatgatggaaat
tccaggtcttccacacctcacagcgctgttaaaactcccccgagcaagtcacctgcaaaa
gcccagaagccagaagagagcaaagcactcattgaatcccctcaaaaatcagaggagaag
cgaggtcagaagagaaaagcatctgagatgatggaagacaatgggaaaaagacactgctg
gacatattcaccggtgtgaagctgtacctgtcaccctctgtgaaggactttgacaaaatc
cggcggtactttatagcatatgatggggatcttgtgccagagtttgacacggcctcggca
acgcacgtgataggggacattgatgacaatcctggtgctatgcgtgtgtctcccgactgg
atctggaaatgcatccggaaacggagactggtagccccgtgctag

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