Columba livia (rock pigeon): 102091738
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Entry
102091738 CDS
T02912
Gene name
THBS1
Definition
(RefSeq) LOW QUALITY PROTEIN: thrombospondin-1
KO
K16857
thrombospondin 1
Organism
clv
Columba livia (rock pigeon)
Pathway
clv04115
p53 signaling pathway
clv04145
Phagosome
clv04350
TGF-beta signaling pathway
clv04510
Focal adhesion
clv04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
102091738 (THBS1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102091738 (THBS1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
102091738 (THBS1)
09143 Cell growth and death
04115 p53 signaling pathway
102091738 (THBS1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
102091738 (THBS1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clv04131
]
102091738 (THBS1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
clv00536
]
102091738 (THBS1)
04990 Domain-containing proteins not elsewhere classified [BR:
clv04990
]
102091738 (THBS1)
Membrane trafficking [BR:
clv04131
]
Endocytosis
Phagocytosis
Opsonins
102091738 (THBS1)
Glycosaminoglycan binding proteins [BR:
clv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102091738 (THBS1)
Domain-containing proteins not elsewhere classified [BR:
clv04990
]
Thrombospondin domain-containing proteins
Thrombospondins
102091738 (THBS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
EGF_CA
TSP1_ADAMTS
cEGF
Laminin_G_3
TSP1_CCN
EGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
102091738
NCBI-ProteinID:
XP_005502344
LinkDB
All DBs
Position
Unknown
AA seq
1166 aa
AA seq
DB search
MGPATVLFLLLMLGVSETKRTAESRSDDNSVFDLFELIGFIRKGAGRRAPGVHLVKGPEP
SSPAYXPDSKFQDLLDAIHAEKGFILLANLRQAKKSRGTLLSVEQKDGSGHVFSLVSNGK
AGTLDLSLSGDGKQQLVSVEDALLATGHWKNITLFVQEDRAQLYVGCEKMENAELDIPIQ
NIFTRDLASSARLRIAKGGVNDNFQGLLQNVRFVFGTTLETILRNKGCSSSTNAIITLDN
PINGSSPAIRTNYIGHKTKDIQAVCGFSCDELTNMFVELQGLRSMVTTLQDRVRKVTEEN
ELIAKVVQITPGVCIHNGILHKNKEEWTIDSCTECTCQNSATICRKVSCPLMPCSNATVP
DGECCPRCWPSDYADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRCEGSSVQTRTCH
LQECDKRFKQDGGWSHWSPWSSCSVTCGTGIITRIRLCNSPVPQLNGKPCEGEARENKSC
QKDPCPINGNWGPWSPWDACTVTCGGGLQKRSRLCNNPEPQYGGKTCVGEAKGTQICNKQ
DCPIDGCLSNPCFAGTTCTSSPDGSWKCGDCPAGYHGDGVHCQDIDECKEVSDACFVFNG
VHRCENTDPGYNCLPCPPRFTGTQPFGRSVEDAMANKQVCKPRNPCTDGTHDCNKNAKCN
YLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHCKKDNCPNLPNS
GQEDYDKDGIGDACDNDDDDDSIPDDRDNCPFIYNPQQYDYDRDEVGDRCDNCPYNHNPD
QTDTDNNGEGDACAVDIDGDGVLNEMDNCQYVYNVDQRDTDLDGVGDQCDNCPLEHNPDQ
EDTDSDLIGDQCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDDNDGIP
DDKDNCRLVANPDQADSDGDGRGDACKDDFDQDSVPDIDDICPENVDISETDFRKFQMIP
LDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFFINTERDDDYAG
FVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTTGPGEHLRNALWHTG
NTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKIMADSGPIYDKTYA
GGRLGLFVFSQEMVFFSDLKYECRDP
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggggccagcgactgttctttttctcctcctcatgctcggcgtctcggagaccaagcgc
accgcagagtccaggagtgatgataacagtgtcttcgatctctttgagctcatcggtttc
atccggaagggagctgggcgccgggcacccggggtgcacctggtgaagggaccagaaccc
tcaagccctgcttacncgcctgactccaagttccaagacttattagatgccatccatgct
gagaagggcttcattctcctggccaatcttcggcaagccaagaagagtagaggcacgctg
ctgtctgtggagcagaaggatggctctggccatgtctttagtctagtatcaaatggcaag
gcaggcaccctggacctgagcctttctggtgatggcaagcagcagttagtgtcagtagag
gatgccttgctggctacaggacactggaagaacatcaccttgtttgtgcaggaggaccgg
gctcagctctatgtggggtgtgagaaaatggagaatgctgaattggacatccccatccag
aacattttcactagggacctggccagcagtgccaggctccgtattgccaaaggaggagtc
aatgacaacttccagggactgctgcagaatgtgcggtttgtgtttggaacaactctggaa
actatcctgaggaacaaaggctgctccagctccactaatgcaatcattactttggacaac
cccatcaatggttccagcccagctatccgcactaattacattggccataaaacaaaggac
atccaagcagtctgtggtttttcctgtgatgaactaacaaatatgtttgtggaactgcaa
gggctccggtccatggttacaacacttcaagacagagttcgcaaagtgactgaagaaaat
gaactcattgccaaagtggtccagatcactcctggagtatgcattcataatggaatcttg
cacaaaaataaagaggagtggaccattgacagctgcactgaatgcacctgccagaactcc
gccactatatgccggaaagtgtcctgtcctctcatgccttgttccaatgccactgtgcct
gatggggagtgctgcccccgatgctggcctagcgactatgcagatgacggatggtctccc
tggtctgaatggacttcatgttctgtgacctgtgggaatgggattcagcagagaggccga
tcctgtgacagtctcaacaaccgctgtgaagggtcttctgtacagactcggacatgccac
cttcaggagtgcgataagagatttaaacaagatggtggctggagtcactggtcaccatgg
tcatcatgttctgtcacttgtggcacgggcattatcactagaattcgtctctgcaactct
ccagtaccacagctgaatggcaaaccttgtgagggtgaggcaagagaaaacaaatcctgc
cagaaggatccttgcccaattaacggcaactggggaccatggtctccgtgggatgcttgc
acagtgacatgtggaggagggctgcaaaaacgtagccgtctctgcaataatcctgagcct
cagtatggtgggaagacttgtgtaggtgaagctaaaggcactcagatctgcaacaaacag
gactgtccaattgatgggtgtctgtccaatccctgctttgcggggactacatgtaccagc
tcccctgatggctcctggaagtgtggtgactgtcctgctggctaccatggtgatggtgtc
cactgccaagatattgatgagtgcaaagaggtttctgatgcctgctttgtcttcaatgga
gtgcacagatgtgagaacactgatcctgggtacaactgtctgccttgtccaccacgtttc
acggggacacaaccatttggtcgcagtgttgaggatgccatggctaataaacaggtctgc
aagccacgtaatccatgcacagatggaacacatgattgcaacaagaatgccaaatgcaat
taccttgggcacttcagtgatcccatgtatcgctgtgaatgtaaaccaggctatgctggc
aatggcataatctgtggagaagatactgacttggatggatggccaaatgagaatcttgtt
tgtgttgccaatgccacttaccactgtaaaaaagataactgtcctaatctgcccaactct
gggcaggaagactatgataaggatgggattggtgatgcctgtgacaatgatgacgatgat
gatagtattcctgatgaccgggacaactgtccattcatctacaacccacagcagtatgac
tatgacagggatgaagtgggtgaccgctgtgataactgcccctacaatcacaaccctgat
caaacagacactgacaacaatggagaaggagatgcatgtgcggtcgatattgatggagat
ggggttcttaatgaaatggacaactgccaatatgtctacaatgtagaccagagggataca
gacttggatggtgttggagatcaatgtgataactgtcctctggaacacaatcctgaccag
gaagacactgattctgacctcataggtgatcagtgcgacaataaccaggatatagatgaa
gatggccatcaaaataaccttgataactgcccctatgtgcccaatgccaatcaagctgac
catgataaagatgggaaaggtgatgcttgtgaccatgatgatgacaatgatggtatccca
gatgacaaagataactgcagattggttgccaacccagatcaagctgattctgatggtgat
ggacgtggagatgcttgcaaagatgactttgaccaagacagtgtgccagacattgatgat
atctgccctgaaaatgtggacattagtgaaactgatttccgaaaattccagatgattccc
ctggatcccaaaggaacatcccaaaatgatccaaactgggtggttcgtcaccagggcaaa
gaactggttcagacagtcaactgtgaccctggccttgcagtcggttttgatgaattcaat
gctgtggacttcagtggcaccttcttcatcaatacagagagggatgacgattatgctggc
tttgtatttggctaccaatctagcagtcgtttctatgttgtcatgtggaagcagatcact
cagtcttactgggactccacaccaaccaaagctcaaggctactcaggtctctccatcaaa
gttgtgaattctaccactggtccaggagaacaccttcgtaatgctctgtggcacacaggc
aacactcctggccaggtgagaactttgtggcatgaccctcgtcacataggctggaaagac
ttcactgcatacagatggcgtcttagccatagaccaaagactggttacatcagggttgta
atgtatgaagggaagaaaatcatggcagactcgggaccaatctacgataaaacctatgct
ggtggtcggctaggattgtttgtcttctctcaagaaatggtgttcttctcagatcttaaa
tatgaatgcagagatccataa
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integrated database retrieval system
