KEGG   Caulobacter mirabilis: CSW64_01420Help
Entry
CSW64_01420       CDS       T05166                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cmb  Caulobacter mirabilis
Pathway
cmb03030  DNA replication
cmb03410  Base excision repair
cmb03420  Nucleotide excision repair
cmb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cmb00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    CSW64_01420
   03410 Base excision repair
    CSW64_01420
   03420 Nucleotide excision repair
    CSW64_01420
   03430 Mismatch repair
    CSW64_01420
Enzymes [BR:cmb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CSW64_01420
    6.5.1.6  DNA ligase (ATP or NAD+)
     CSW64_01420
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CSW64_01420
DNA replication proteins [BR:cmb03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CSW64_01420
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CSW64_01420
DNA repair and recombination proteins [BR:cmb03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CSW64_01420
   NER (nucleotide excision repair)
    Other NER factors
     CSW64_01420
   MMR (mismatch exicision repair)
    Other MMR factors
     CSW64_01420
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID: ATQ41163
UniProt: A0A2D2AT56
LinkDB All DBs
Position
complement(292249..293853)
Genome map
AA seq 534 aa AA seqDB search
MRAFARLLDSLSFTASRNAKLRLVRDFLAEQPDPDRGWALAALTGDLSFSAAKPAAIRKA
VEARMDPVLFGWSYDYVGDLAETVALVWPAQPGANREPELSEVVDALRTASRAEVQPLIE
RWLDALDADGRWALLKLLTGGLRVGFSSRLAKQACADLGGVETREIEEVWHALAAPYEDL
FAWLEGRSERPSADHPGRFRPVMLAQPIDEAVDFAKLNAGDYAAEWKWDGIRVQAVSERG
VRRLYTRTGDDISHAFPDVIEAMAYEGAVDGELLVLHDGALASFGDLQQRLNRKTVDAKL
LKAYPAGVRAYDLLLDGEADLRDLPFAERRKRLETFISRLDSARFDLSPLQPFETWGQLS
DLRADPPPGDPALSEGLMLKRWDSLYEAGRPKGPWFKWKRDPHLIDAVLMYAQRGHGKRS
SFYSDYTFGVWREDANGDRILTPVGKAYFGFTDEELKQLDKYVRDNTVERFGPVRSVRAG
LDFGLVLEVAFEGLQRSTRHKSGVAMRFPRISRIRWDKPAREADDLATLERMLG
NT seq 1605 nt NT seq  +upstreamnt  +downstreamnt
atgcgcgccttcgcccgcctgctcgacagcctgtccttcaccgcctcgcggaacgcgaag
ctgcggctggtccgcgacttcctggcggagcagcccgatccggaccgcggctgggcgctg
gccgccctgaccggcgatctcagcttctcggccgccaagcccgccgccatccgcaaggcg
gtcgaggcgcggatggacccggtcctgttcggctggtcctacgactatgtcggcgacctg
gccgagaccgtcgccctggtctggccggcccaaccaggcgccaatcgcgagcccgagctg
tcggaagtggtcgacgccctgcgcacagcctcccgcgccgaggttcagccgctgatcgag
cgctggttggacgcgcttgacgccgatggccgctgggcgctgctcaagcttctgaccggc
ggcctgcgcgtgggcttctccagccggctggcgaagcaggcctgcgccgacctgggcggg
gtcgagacacgcgagatcgaagaagtctggcacgccctggcggcgccctacgaggacctg
ttcgcctggctcgaaggccggtcggaacgacccagcgccgaccaccctggccgcttccga
ccggtgatgctggcccagccgatcgacgaggccgtcgatttcgccaagctcaacgctggc
gactacgctgcggagtggaagtgggacggcatccgcgtccaggctgtcagcgagcgcggc
gtccggcgcctctacacccgcaccggcgacgacatcagccatgcgttcccggacgtgatc
gaggcgatggcctacgagggcgcggtcgacggcgagttgctggtgctgcatgacggcgcg
ctggcgagcttcggcgacctgcagcagcggctcaaccgcaagactgtcgacgccaagctc
ctcaaggcctatccggccggcgtccgggcctacgacctgctgctcgacggggaggcggac
ctgcgcgaccttcccttcgcggaacgtcggaaacggctcgaaaccttcatttcaaggctc
gattcggcccgattcgacctgtctccgctgcagcccttcgagacctggggacaactttcc
gaccttcgcgccgatccgccgccgggcgatccggccctgtcggaagggctgatgctgaaa
cgctgggacagcctctacgaagcgggccggcccaagggaccctggttcaagtggaagcgc
gatccgcacctgatcgacgcggtcctgatgtacgcccagcgcggccacggcaagcggtcc
agcttctacagcgactacaccttcggggtctggcgcgaggacgccaacggcgatcggatc
ctgaccccggtcggcaaggcctatttcggcttcaccgatgaggagctgaagcagctcgac
aagtacgtccgcgacaacaccgtcgaacggttcgggccggtgcggtcggtgcgggccggc
ctcgacttcgggctggtgctggaggtggcgttcgaggggctgcagcggtcgacgcggcac
aagagcggcgtcgccatgcgcttcccgcgcatcagccgcatccgctgggacaagccggcg
cgcgaggccgacgacctggcgacgctggaacggatgctcggctga

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