Cyanidioschyzon merolae: CYME_CMJ074C
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Entry
CYME_CMJ074C CDS
T00175
Name
(RefSeq) probable carbon catabolite repressor Ccr4p
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYME_CMJ074C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CMJ074C
Enzymes [BR:
cme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
CYME_CMJ074C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CYME_CMJ074C
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CYME_CMJ074C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Hpr_kinase_N
Motif
Other DBs
NCBI-GeneID:
16994156
NCBI-ProteinID:
XP_005534819
UniProt:
M1VCE2
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Position
10:224620..226467
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AA seq
615 aa
AA seq
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MSSKEKPGSSLSKPNPREKERPPVATNEEGFATPISRKLLHEPAVVRVELLQTRTPVEGC
ELTPFVLLKDLNGDQRTAEAMETRTKGVLAAQYRWYRREYRFVCAKTGLPAQFECLELGR
VRTELERLGDTSVANIAGLAYFHQSTEIIDIWSTFRELWRRVRVLQQQKEARREPALRNK
NALRIDQSRDEALVCEIPPENDSKLVECGFVRNYAPTMVDIGRTLVLECRYIWKVPNEEI
RIGPPVYFETLPVIPFPPPPPERRMFLVADTNCDYSVKDRVCSGEPNCFPLRLLSYNCLA
EIYANSDLYSYCPDWALSWNYRRRNLLREILSLEADVVCLQEIQADHFEEHFNPAMRRAG
YEGIYKAKMRESMGRKGKVDGCATFYRRDRFQLIEKHEIEYSTVAREKVKEKRLLNRLMK
DNVALLVVLEDTATNSRVCVANTHIFWDPDQTDVKLFQVDTFLQEAERYIGPRNLPLLIA
GDFNSLPESSIYELVVGNEVSGQRPDVIDGMLEILKISPCQHNMLLRSVYGLGGEFTEPA
YTNYTGHFVGTLDFIFFTPDKIVPVGTLEILDEARLLGEEYTALPNPRWSSDHISIMADF
DIRVLHPGQSTASWA
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgagctccaaagaaaaaccaggttcctcgctaagcaaacctaaccctagagagaaagag
agacctcccgttgcaacgaatgaggaaggctttgcgactccgatttcacgcaagcttctg
cacgaacctgcagttgttcgagtagagctgttgcagacgcgaacccctgtggaggggtgt
gaactgacaccttttgttcttcttaaggacttgaacggtgatcagcgcacagcagaagct
atggaaacgcgaacgaaaggggtcttagcagcacagtaccgttggtatcgtcgggagtac
cggtttgtgtgcgcgaagacgggtttgccggcccagtttgagtgcctggagcttggacgt
gtccgtactgagctggaacgcctaggagatacatccgttgctaatatagcaggactcgcg
tattttcaccaaagtactgagatcatagatatatggtcaacgtttcgggaactctggcgg
agagttcgtgttttacagcaacaaaaggaggcccgcagagagcccgcgcttcgcaacaaa
aatgcattacgcatcgaccagagcagagacgaagccttggtgtgcgagattccgccggaa
aatgactcgaagttggtggaatgtggttttgtgcggaactatgcccccactatggttgac
atcgggaggactcttgtactcgagtgtcgatatatctggaaagtgcccaatgaggagatc
cgtatcggtccgccagtttactttgaaactctaccggtcataccgtttccaccaccgcct
ccggagaggcgcatgtttctggttgccgacacaaactgtgattactccgtcaaggatcgc
gtctgcagtggtgaaccgaactgcttccctttgcgcctgctatcatacaattgcttggca
gagatatacgcgaattcagacctctactcatattgcccagactgggcgctgtcttggaat
tatcgccgacggaatctgctgcgggaaattctgagccttgaggctgatgtggtttgcttg
caggagatccaggcggatcactttgaagagcatttcaacccagcaatgcgtcgcgctggc
tacgagggaatatacaaagcgaagatgcgagagtccatggggcgtaagggcaaagtcgat
ggatgtgcaacattttaccgtcgggatcgctttcaacttattgagaaacacgagattgag
tacagtacggtagcccgcgaaaaggtgaaagaaaaacgtctactcaatcgacttatgaaa
gacaatgttgctttgcttgttgttctcgaggatactgcaacaaacagcagagtctgtgtc
gcgaacacgcatattttctgggatcctgaccaaacggatgtcaaactttttcaagtagat
acttttctgcaagaggcggaacgttacattgggcctcgcaaccttccgcttctcatcgca
ggcgatttcaactcgcttcctgagagttctatatatgaactggtagtaggaaacgaagtc
agcggtcaacgaccagatgttattgatgggatgcttgaaatattgaaaatttctccatgt
caacataacatgttgcttcgatccgtgtacggtctaggaggcgagttcacggagcctgca
tatacgaactatactggacactttgttgggaccctagatttcatcttttttactcctgac
aagatcgtgccggttggaacgcttgagatcctcgatgaggcgcggttacttggggaagaa
tataccgcgctcccgaatccgcgctggtcctcggatcatatctcgatcatggcggacttt
gacatccgcgtgcttcatccggggcaaagcacagcctcgtgggcctga
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