Clavibacter michiganensis subsp. insidiosus: VO01_02610
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Entry
VO01_02610 CDS
T03862
Name
(GenBank) ABC transporter
KO
K03701
excinuclease ABC subunit A
Organism
cmh
Clavibacter michiganensis subsp. insidiosus
Pathway
cmh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VO01_02610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmh03400
]
VO01_02610
DNA repair and recombination proteins [BR:
cmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VO01_02610
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VO01_02610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_16
AAA_29
AAA_21
DnaJ_CXXCXGXG
nSTAND1
AAA_22
RsgA_GTPase
AAA_33
MeaB
NACHT
AAA_18
MobB
Viral_helicase1
NTPase_1
DUF87
Motif
Other DBs
NCBI-ProteinID:
AJW78158
UniProt:
A0A0D5CET8
LinkDB
All DBs
Position
complement(528456..530945)
Genome browser
AA seq
829 aa
AA seq
DB search
MPSPEIHPPASAPDDRADGFVRVRGASENTLRDVDVDIPRDRIVAFTGVSGSGKSSLAFG
TVYAEAQRRFFESVAPYARRLIRQEQTPHVESITGLPPAVALQQRRGAPSTRSTVGTVTT
LSNSLRMLMSRAGTYPAGQGRLDSDAFSPNTAAGACPVCHGLGVAHTVTEASLVPDPSLT
IREGAVAAWPGAWQGKNLRDIVIALGHDVDVPWRELPQDARDWLLFTEEQPVVQITPQRD
RVAKPYNGRFWSARSYVLHTLADSASPRLREAALAHMVSGTCERCGGSGLTPEALAVTFA
GRSIQELNALTLADLATAIAPTDGMGDVAVTITTDLVARLAVLVDLGLGYLSLGRVTTTL
SPGEMQRLRLATQLRSGLFGVVYVLDEPSAGLHPADAEPLLEVLEQLRDSGNSVFVVEHD
MDVVRRSDWIVDVGPGAGQAGGSVVYSGPVHGLREVEASATRPHLFPDLAPARVDRTPRT
PTGSIRATGVTLHNLVDLDVEIPLGVMVAVTGVSGSGKSTLVSRVLPDLLRASLAPDRVV
VETSDDADGDDDASGPARIARVEGADAVDRLVSVDQRPIGRTPRSTLATYTGLFDAVRRT
YASTDEARARGYGAGRFSFNVAGGRCETCQGEGSVTVELLFLPGSYGPCPTCHGARYEPA
TLEIEHHGKSIADVLAMTVDEAHGFLADVPLAARALATLRDVGLGYLRLGQPATELSGGE
AQRIKLATELQRAPRGHTLYLLDEPTTGLHPADVVLLLRQLQGLVDAGSTVVVVEHEMDV
VADADRVIDLGPSGGDQGGRIVAQGTPREVADTAGSRTAPYLARRLDAS
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
gtgccttcccccgagatccacccgcccgcatccgcccccgacgaccgcgccgacggattc
gtccgggtgcggggagcgtccgagaacacgctccgcgacgtggacgtcgacatcccgcgc
gaccggatcgtcgccttcacgggcgtctcgggatccggcaagtcgtcgctcgcgttcggc
accgtctacgccgaggcgcagcgccggttcttcgagtcggtggcgccgtacgcgcgccgg
ctgatccggcaggagcagacgccgcacgtcgagagcatcaccggcctgccgcccgcggtc
gcgctgcagcagcgccgcggcgccccgagcacgcgctcgaccgtcggcaccgtcaccacg
ctctccaactcgctgcgcatgctcatgtcgcgcgccggcacctaccccgcgggccagggc
cgcctcgactccgacgccttctcgccgaacaccgccgcgggcgcgtgcccggtctgccac
ggcctgggcgtcgcgcacaccgtgaccgaggcgtcgctcgtgccggatccgtcgctcacc
atccgcgagggcgccgtcgccgcatggcccggcgcgtggcagggcaagaacctgcgcgac
atcgtcatcgcgctcgggcacgacgtggacgtgccgtggcgcgagctgccgcaggacgcg
cgggactggctgctcttcacggaggagcagccggtggtgcagatcacgccgcagcgcgac
cgcgtggcgaagccctacaacgggcggttctggagcgcgcgctcctacgtgctgcacacg
ctcgccgactccgcgagcccgcgcctgcgcgaggcggcgctcgcgcacatggtctcgggg
acgtgcgagcggtgcggcggcagcgggctcacgcccgaggcgctggccgtgaccttcgcg
ggccgcagcatccaggagctcaacgcgctgacgctcgcggacctcgcgacggccatcgcc
ccgacggacggcatgggcgacgtggccgtgaccatcacgaccgacctcgtcgcgcgcctc
gccgtgctcgtggacctcgggctcggctacctcagcctcggccgcgtcaccacgacgctc
tccccgggcgagatgcagcggctgcggctcgcgacgcagctgcggtcgggcctgttcggg
gtcgtctacgtgctcgacgagccgtcggcggggctgcacccggccgacgcggagccgctc
ctcgaggtgctcgagcagctgcgcgactccggcaactccgtgttcgtggtcgagcacgac
atggacgtcgtccggcggtccgactggatcgtggacgtggggccgggcgcggggcaggcg
ggcggatccgtcgtctacagcggtcccgtccacgggctccgcgaggtggaggcctcggcg
acccggccgcacctcttccccgacctcgcgccggcgcgggtggaccgcacgccgcgcacg
ccgaccgggagcatccgggcgacgggcgtgacgctgcacaacctcgtggacctcgacgtc
gagatcccgctcggcgtgatggtcgcggtgacgggcgtctccggatccggcaagtcgacg
ctcgtgagccgcgtgctgcccgacctgctgcgcgcgtcgctcgcgcccgaccgcgtggtg
gtcgagacctccgacgacgcggacggcgacgacgacgcgtcgggccccgcgcggatcgcc
cgggtcgagggggccgacgccgtcgaccggctcgtgtccgtggaccagcgcccgatcggc
cgcacgccgcgctcgacgctcgccacctacacggggctcttcgacgcggtccggcgcacc
tacgcgtccaccgacgaggcgcgcgcccgcggctacggagcagggcggttctcgttcaac
gtcgccggcgggcgctgcgagacgtgccagggcgagggatccgtcaccgtcgagctcctc
ttcctccccggctcctacgggccgtgccccacgtgccacggcgcgaggtacgagccggcg
accctggagatcgagcaccatgggaagtcgatcgccgacgtcctcgcgatgacggtggac
gaggcgcacggcttcctcgccgacgtgccgctcgccgcgcgcgccctcgcgacgctccgc
gacgtggggctcggctacttgcggctcgggcagcccgccaccgagctgtcgggcggcgag
gcgcagcggatcaagctggccaccgagctgcagcgcgcgccgcgcggccacaccctctac
ctcctcgatgaaccgacgacgggcctgcacccggccgacgtggtgctcctcctccgccag
ctgcaggggctcgtggacgcgggcagcacggtcgtcgtggtggagcacgagatggacgtg
gtggcggacgccgaccgcgtgatcgacctcgggccgtcgggcggcgaccagggcgggcgg
atcgtcgcgcagggcaccccgcgcgaggtcgccgacaccgccgggagccgcacggcgccg
tacctggcgcggcggctcgacgcctcctga
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