KEGG   Callorhinchus milii (elephant shark): 103180521Help
Entry
103180521         CDS       T03088                                 

Gene name
lig3
Definition
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    103180521 (lig3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cmk03400]
    103180521 (lig3)
Enzymes [BR:cmk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     103180521 (lig3)
DNA repair and recombination proteins [BR:cmk03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     103180521 (lig3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 103180521
NCBI-ProteinID: XP_007894631
LinkDB All DBs
Position
Un
AA seq 1043 aa AA seqDB search
MFVVGRVGVTSAFNGGKRHQKQSGVGGYLKERWRESASERIWPAWNQLVKAVFEKQSSGN
STHPFLLGSGHQSGCLLPAHWVWSSVQAPAAQNQKLLSKSLLALVLSRILSDTFCISRAD
MAEQRYCVDYSKRGTAGCKKCKEKIPKGLVRIGKIVPNPFSESGEMKEWYHVKCMFEKLE
RARLSTKKIDDLSDLEGWEELQDEEKELINKHITEHAIKMGNTFPKYKTTPEKVTPSTSS
PSPLKFSGFSAKGGSPGGKASPSSSKLPVVAGDPNHKDCSLREFRKLCATIAERPSYNSK
TQIIQDFLRKGTSGDGKFHGDVYLTIKLLLPGVIKHVYNLNDKQIVKLFSRIFNCSLDDM
VRDLEQGDVSETVRIFFEGTSSFPPAAKSTMTIQDVEAALTRLSKLTREEEQQRELQAIT
AKCTGNDLKCIIRLIKHDLRMNSGAKHVLDALDPNAYDAFKASRNLQDVVDRVLKNQQES
QQVPGMRKMLSITATLLTPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGD
TFQYYSRSLKPVLPHKVAHFKDFIPKAFVAGDSMILDSEVLLIDTATGKPLPFGTLGVHK
KAAFKDANVCLFVFDCIYFNGVSLMDRPIRERRQFLHDNMVEIPNRIMFSEMRHVNRASD
LGDMINRVIKEGLEGLVLKDVKGLYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQ
GNKGGMMSIFLMGCYDPKAGCWCTVTKCGGGHDDATLGRLQTELDMVKISKDASKIPDWL
KISKNYIPDFVVRDPKTAPVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWQTATN
LPQLKELYKVSKEKSDIEIAIACARGGEESGTGGTSSSETGPTPKPSPGSSKGPSKSPWK
KRQSQDANSSTSQKVTPENSDSTPRKGLKRKLPGVEQNGNKIKSPGTEKSNGSLLSSPTT
SPTPNQTLLDIFTGVRLYLPASAQDFSRIRRYFVAYNGDLVPEFDVATATHVIGDVKENV
CAKRVSVNWIWQCIRKRRLVSPC
NT seq 3132 nt NT seq  +upstreamnt  +downstreamnt
atgtttgttgtcggcagagttggggtgaccagcgcctttaacggggggaaacgtcatcag
aaacaaagcggagttggcggttatttaaaggagaggtggcgcgagagcgcgagcgagagg
atttggccagcttggaatcaactggtgaaggcggtgtttgaaaagcaaagcagcggcaat
tctacccatcctttcctgctcgggtcgggtcatcagtcgggctgtttgctcccggcacat
tgggtgtggagcagcgtgcaagctccagcagcacaaaaccagaagctgctctccaagtcc
ctccttgccttggttctctcccgaattctcagcgacacattctgtatctcaagagcagac
atggccgagcagcgatactgcgtggactattccaagcgtggcacggccggctgcaagaaa
tgcaaggagaagatcccaaaggggctggtgcgcatcggcaagatcgtcccaaaccccttc
tcggagtcgggggagatgaaggagtggtaccatgtcaaatgtatgttcgagaagctggag
cgagctcgactgagcacgaagaagatcgatgatctgagtgatctggagggttgggaagag
cttcaggacgaagagaaagagctgatcaacaagcacatcacagaacatgcaatcaagatg
ggcaacactttccccaaatacaagactaccccagagaaggtgaccccctcgacatccagc
ccatcacctcttaaattctctggattttcagctaaaggaggaagcccaggtggcaaggcc
tcgccctcaagcagcaagctgccagtcgtcgcgggcgatcccaaccacaaggactgctca
ttgcgggaattccgcaaactgtgcgcgacgatcgcagagaggcccagctacaacagcaag
actcagatcatccaggactttctcaggaagggcacaagtggtgatggtaaattccatgga
gatgtgtatttgactataaagctcctgctcccaggcgtcatcaaacatgtgtacaacctg
aacgacaagcagattgtcaagctcttcagtaggatatttaactgcagtctggatgacatg
gtccgagacctggagcagggggacgtctctgagactgtgcgcatcttttttgaaggcacc
tcgagcttccctcccgcagccaagagcacgatgactattcaggacgtggaggctgctctg
actcggctctcaaagctgactcgggaggaggagcagcagagggagcttcaggctattact
gccaagtgtacaggaaatgatctgaaatgcattattcggctgatcaagcacgacctgcgg
atgaatagtggagccaaacatgtgctggacgctctggatcccaatgcttacgatgccttc
aaagcctcacgaaatttacaggacgtggtggaccgtgttctcaagaaccagcaagaatct
cagcaggtcccaggcatgaggaagatgttgagcatcacagcaacgcttctgactccagtc
cagcccatgctggctgaagcttgcaaatcgatagaatacgctatgaagaagtgccccaat
ggcatgtacgcggaaatcaaatacgacggagagcgggttcaggtgcacaagaacggagac
acctttcagtactatagcaggagtctgaaacctgtgttacctcacaaggttgctcatttt
aaggactttattcccaaagcgtttgtggcgggtgacagcatgatactggactctgaggtg
cttctgattgacacagccacagggaagcccctcccatttggaacgctgggtgtacataag
aaagctgccttcaaagatgcgaacgtttgcctgtttgtctttgactgcatttatttcaat
ggtgtcagcctcatggacagaccgatccgtgagcggaggcagtttcttcacgataacatg
gtggaaatccccaacaggatcatgttttccgagatgaggcacgtgaatagggcctccgac
ctgggggacatgatcaatcgagttatcaaagagggtctggagggactggtgctaaaggac
gttaagggtctgtacgaaccaggaaagcgtcactggctgaaagtgaagaaggactatctg
aatgaaggtgcgatggccgacactgcagacctggtggtgctgggggctttctatggacaa
ggaaacaaaggtgggatgatgtccatcttcctgatgggctgctacgatcccaaagctgga
tgttggtgcacagtgaccaagtgtggaggtggccatgacgacgctacgctgggccgatta
cagaccgaactggatatggtgaaaatcagcaaggatgcaagcaaaataccagactggcta
aagatcagtaagaactacatccctgattttgttgtccgggatccaaagactgccccagtg
tgggagatcacgggagcagagttctctaagtcggaggcgcacactgcagatggcatctcg
atccgcttcccccgatgcacccgtatccgtgatgacaaggactggcaaactgcaactaac
cttcctcagctcaaggaactgtacaaggtttctaaggaaaagtctgatattgaaattgcc
atagcttgtgccaggggcggggaagaatcgggtacaggtggcactagcagcagcgagact
ggaccaactcccaaaccaagcccaggcagctccaaagggccttcaaagtctccatggaaa
aaacgtcaaagccaagatgccaacagcagtacatcccaaaaggttacccctgaaaattca
gattcaacgccaagaaaggggttgaagcggaaattgccaggagtggaacagaatggaaat
aagatcaaatcgcctgggacagaaaagagtaacggctctttgctctccagtccgaccaca
tcgcctactccaaatcagacgctgctggacatatttacaggagtaaggctctatttgcct
gcatcagcccaagacttcagtagaatccgacgctactttgtggcgtacaacggcgacctg
gttccagagtttgacgtggccacagcaacgcacgtgatcggtgacgtcaaggagaacgtg
tgtgccaaacgtgtttcagtgaattggatctggcagtgcatcaggaagagaaggctggtt
tcaccgtgctga

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