Callorhinchus milii (elephant shark): 103182886
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Entry
103182886 CDS
T03088
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103182886 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmk03041
]
103182886 (sf3b1)
03036 Chromosome and associated proteins [BR:
cmk03036
]
103182886 (sf3b1)
Spliceosome [BR:
cmk03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
103182886 (sf3b1)
Complex B
103182886 (sf3b1)
Complex C
U2 SnRNP specific factors
103182886 (sf3b1)
Chromosome and associated proteins [BR:
cmk03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
103182886 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
HEAT_EZ
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
CEP104-like_TOG
Adaptin_N
UNC45-central
Motif
Other DBs
NCBI-GeneID:
103182886
NCBI-ProteinID:
XP_007898249
LinkDB
All DBs
Position
Unknown
AA seq
1329 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQNKKAALVVEGDSDGVGLDSTGYYDQEIYGGSDSRFAGYMTS
IPANEQEEDDDDYSSPSLLGQKKPGYHAPVALLNDIPQSNEQYDPFAEHRPQRIAEREDE
YKARRRQMIISPERHDPFADGGKTPDPKVHARSYIDVMREQHLTKEEREIRQQLAEKAKA
GELKAVNGSAQQPLKRKRRWDQTADQTPSTTPKKLSSWDQAETPGHTPGHTPGHTPGHTP
GHTPGHTPGNTPSQSRWDETPGRSKGSETPGATPSSRMWEATPSHTPAGAATPGRDTPGH
ATPGHGGATSSVRKNRWDETPKTDRETPGHGSGWAETPRTDRGGDSIGETPTPGASKRKS
RWDETPASQMGGNTPLLTPSGITPKGTPAMAMATPTPGHLMSMTPEQLQAWRWEREIDER
NRPLTDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPIGGLTGFHMQSEDRSAKS
MNDQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAA
LRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKIL
VVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVV
ASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLV
DEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIP
LMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFF
KHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKI
MGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGT
VLWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILG
ALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREW
MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVA
IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLED
ALMDRDLVHRQTASAVVQHMSLGVYGFGCEDALNHLLNYVWPNVFETSPHVIQAVMGALE
GLRVALGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIFNDEKNTH
IRYELDYIL
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgcgaagacccacgaagatattgaggcacaaattcgagaaattcagaac
aagaaagcggcacttgttgtcgagggtgattcagatggagttggtcttgattcaactggt
tactatgatcaggagatctatggcggaagtgacagcagatttgcaggatatatgacatcc
atccctgcaaatgagcaggaagaggatgatgatgactattcttccccgagtttgcttggg
cagaagaagcctggataccatgcaccagtagcgctgctgaatgatataccacagtcaaat
gaacagtatgatccatttgcggaacaccgtccgcaacgaattgcggaacgagaagatgag
tacaaagcacgtaggaggcagatgattatttctcctgagcgtcatgatccctttgcagat
ggtggaaagacaccagatcctaaggtccatgccagaagttacatcgatgttatgcgtgaa
caacatttaactaaggaagagagggaaataaggcagcaactggcagagaaagctaaggct
ggagaacttaaagcagtcaatggatcagctcaacaacctcttaaacgcaagcgacgttgg
gatcagactgcagatcaaactcctagtacaacacccaaaaagttgtccagctgggaccaa
gcagagactccgggacataccccagggcacacacccggacataccccagggcacacaccc
ggacatacgccaggtcacacccctggtaacactccctctcaaagtcgctgggatgaaaca
cctggccgttcaaagggtagtgagactccgggtgcaacaccaagctcaaggatgtgggaa
gccactcccagtcacaccccagcaggagctgccacaccaggccgtgatacacctgggcat
gcaacacctggccacggaggtgcaacatctagtgtgcgtaaaaacagatgggatgaaaca
ccaaagactgacagagaaactccgggacatggcagtggctgggctgagaccccacgtaca
gatcgtggaggtgattctatcggggaaactccgacccctggtgctagcaagcgaaaatct
cgttgggatgaaacaccagcaagccagatgggcggcaatactccattgcttactccaagt
ggaattacacccaaaggcacaccagcaatggctatggcaaccccgacacctggtcacctg
atgagtatgacacctgaacaacttcaggcttggagatgggagcgtgaaattgatgaaaga
aatcgcccacttacagatgaggaattggatgctatgttccctgagggttataaggttctt
ccaccaccagctggttatgtcccaattcggacaccggcccgtaaactgacagcaactcca
acaccaatcgggggcttaaccggtttccacatgcagtctgaggaccgctctgcgaagagt
atgaatgatcagccttctggaaaccttccattcctgaaacctgatgatatccaatacttt
gacaaattgctggttgaagttgatgaatcgaccctgagtccagaagaacagaaggaaaga
aagatcatgaagttgcttctgaaaataaagaacggtactccaccaatgagaaaggctgcg
ttgcgtcaaataactgacaaagctagagaattcggtgctggccccctgttcaaccagatt
ctaccactgctgatgtccccaactcttgaagaccaggaacgtcacttgttggttaaagtt
attgacagaatcctgtacaaattagatgatttggttcgaccttatgtacacaagattctt
gtcgttattgaaccattgttgattgatgaagattactatgctagagtggaaggcagagaa
atcatctccaatttggcaaaggctgctggtttggccacgatgatttccaccatgcgtcct
gatattgataacatggatgagtatgtccgtaacacaacagctcgagcctttgctgtggta
gcttcggctctggggattccatcgctgttacctttcctcaaagcagtgtgtaagagcaag
aaatcatggcaggccagacatacaggaatcaagattgtgcaacagattgcaatcctcatg
ggttgtgctatcttgcctcatcttagaagcttggttgaaattattgaacatggtctggtt
gatgagcaacagaaagttcgaactatcagtgctctggctattgctgctttggctgaggct
gcaaccccgtacggcattgaatcatttgactctgttctgaaaccactgtggaagggcatt
cgccaacacagaggcaaaggtttggctgccttcttgaaagctattggttacctgattcct
cttatggatgctgaatacgcaaactactacactcgtgaagtgatgttgatccttatccga
gagttccagtctcctgatgaagaaatgaaaaagattgtgctgaaggtggtgaaacagtgt
tgtggcacagatggtgtggaagcaaactacatcaaaaccgaaatccttccaccattcttc
aaacacttctggcaacatcgaatggcattggacagaaggaactacagacagttagtagac
accacagtggaacttgcaaacaaagttggagcagctgagatcatctccaggatagttgat
gacttgaaggatgaagctgagcagtacagaaaaatggtgatggaaaccattgaaaagatc
atgggtaatctcggagcagcagatattgaccacaagctggaagaacaacttattgatggc
atcctatatgcgttccaggaacagactaccgaggactctgtgatgttgaatggtttcggt
acagtggtaaatgctctgggaaaacgagtaaaaccatacctgccccagatctgtggtaca
gtcttgtggcgtctaaacaacaaatcggccaaagtgcgacagcaagccgcagatctgatc
tcccggattgcagtcgtcatgaagacatgtcaagaggaaaaactgatgggccacttgggt
gttgtgctgtatgagtatcttggagaagagtacccagaggttctgggcagcattttggga
gcattgaaagctattgtcaacgttataggtatgcacaagatgaccccacctataaaggac
ctgctgccaagactcactccaatcctgaagaacaggcatgagaaggttcaggagaattgc
attgatctagttggacgaattgcagacagaggtgcagaatatgtgtctgctcgtgaatgg
atgaggatctgctttgaattactggagcttttgaaggctcacaaaaaagccatccgaaga
gcaactgtgaatacgtttggctacattgcaaaagctattgggccccatgatgtgttggcc
acactactgaacaatctgaaagttcaggaacgtcagaacagagtgtgcaccacagtagca
attgctattgtggcagaaacgtgttctccattcacagtgctgcctgctttgatgaacgag
tacagggttccagaactgaatgtacagaatggtgtgctgaaatctctttcattcttattt
gagtacattggagaaatgggaaaggattatatttatgctgttacaccacttcttgaagat
gctttaatggatagagacctggttcacagacagacagctagtgcggttgttcagcacatg
tcactgggagtatatggatttggctgtgaagatgcccttaatcacttgttaaactatgta
tggcccaatgtttttgagacatcaccacatgttattcaggctgttatgggggcattggag
ggcctaagggttgcattaggcccttgcagaatgctgcagtattgtctgcagggcttgttc
cacccagccagaaaagtgcgtgatgtgtactggaagatctacaactccatttacatcggt
tcacaggatgccttaattgcacattatccaaggatcttcaatgatgaaaagaatacacat
atccgttatgaacttgattacatcttataa
DBGET
integrated database retrieval system
