Cucumis melo (muskmelon): 103482768
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Entry
103482768 CDS
T03195
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03022
Basal transcription factors
cmo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103482768
09124 Replication and repair
03420 Nucleotide excision repair
103482768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmo03021
]
103482768
03400 DNA repair and recombination proteins [BR:
cmo03400
]
103482768
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
103482768
Transcription machinery [BR:
cmo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
103482768
DNA repair and recombination proteins [BR:
cmo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
103482768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
103482768
NCBI-ProteinID:
XP_008437310
UniProt:
A0A1S3ATU9
LinkDB
All DBs
Position
9:23594229..23601324
Genome browser
AA seq
768 aa
AA seq
DB search
MGHGDRGRPSKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRNGDKEVGKRDFSKLELKPD
HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK
DEVISRARIIPEDSGNGEFTISKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV
ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS
GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD
SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV
ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM
TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA
MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS
RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS
FKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDKARRSV
GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFT
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgggacacggtgacagaggaagacccagcaaaaaacctaaattcggcaaggaggattat
aagaaagctaattttgaagatgacgatgtctatcatcttgatgatcccgacgacgacgat
cgcaatggtgataaagaagtaggcaagagagattttagcaaattggagttaaaacctgac
catgctaaccggcctttatgggcttgtgctgatggtcgcatattccttgaaactttctcg
cccttgtacaaacaggcgtatgatttccttattgccattgcggaaccagtttgcaggcca
gaatcaatgcacgagtataacctcactccacattctttgtatgctgccgtttccgttggt
ttggagaccgaaacaatcatcgcggttctgagtaagttgtctaaggccaaactacctaag
gagatgattgatttcatttatgcttctactaccaactatggcaaggtgaagcttgtcctt
aaaaagaaccgatatcttgtggaatccccatttccagaggtattgcagaaattgctcaag
gacgaggttataagcagagccagaatcattcctgaggattctggaaatggtgagtttaca
attagcaaaacagcaggtgaacttgggagtcgccatgaaggattgcttaatgaagcagaa
gctgcagctgcagctgaggaaagagaaactcattcatttgaaattgacccgtcacaagtt
gaaaatgttaaacaacgctgcctgcccaatgccttaaattatccaatgttggaagagtat
gacttcagaaatgatactatcaatccagacttggatatggaactaaaaccacaggctcag
cctagaccatatcaggaaaagagtctcagtaaaatgtttggaaatggtagagcaagatct
ggcattattgtacttccttgtggagccgggaagtctcttgttggtgtttctgcagccagt
cgtatccggaaaagttgtttatgtttagctacaaatgctgtatcagtggatcagtgggct
tttcagtttaagctgtggtctaccattcgagatgatcagatttgtcggttcacatcagat
agtaaagaaagattccgaggaaatgccggggtggttgttacaacttataacatggttgct
tttggtggtaaaagatctgaagaatctgaaaagattattgaagaaatcagaaatagagaa
tggggactacttctcatggacgaggtgcacgtggttcctgctcacatgtttcgtaaggtt
atcagcctgactaagtctcactgcaagcttgggctcactgccacacttgtgagagaagac
gaaagaattacagatttaaactttcttattggtcctaagttgtatgaagcaaactggttg
gatcttgtgaaaggaggatttattgcaaatgtgcagtgtgctgaagtttggtgtcctatg
acgaaggagttttttgctgaatatctgaagaaagaaaactcaaagaaaaaacaggctctt
tatgtaatgaatcccaataagttcagggcgtgtgagttcctcatacggtttcatgaacag
cagcgtggtgataagataattgtttttgctgacaatctttttgcacttacggaatatgca
atgaagcttcgtaaacctatgatctatggtgcaacaagtcatattgagaggacaaaaatt
cttgaagcattcaaaactagtcgtgatgtgaataccgtttttctttcaaaggtgggtgat
aactctatcgatattcccgaggcaaatgtgatcattcagatttcatcacatgcgggttca
aggcgtcaagaagcccagcgtctggggcgtattcttagggctaagggtaaacatcaggac
aggatggctgggggtaaagaggagtataatgcctttttttattctcttgtttctactgat
acacaggaaatgtactattcaactaaacgacaacagtttttgatcgatcaaggttatagc
tttaaggtcattacaagcttgccaccagctgatgcaggagctgagttgagctatcatcgt
cttgatgatcagttggcccttcttgggaaggtactgaatgcaggcgacgatatggtaggg
ttggagcagttagaagatgatgcagaccaaattgcacttgataaggctcgccgttcagtg
ggatccatgagtgcaatgtcaggagcaaatggcatggtctacatggagtacagcactgga
cggaagctcgctggtcaagggcagcttaagagcaagcccaaagacccagcaaagagacat
catctgttcaaaaagcggtttacatga
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