Cucurbita moschata (crookneck pumpkin): 111436208
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Entry
111436208 CDS
T05248
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
111436208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmos03400
]
111436208
Enzymes [BR:
cmos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
111436208
DNA repair and recombination proteins [BR:
cmos03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
111436208
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
111436208
NCBI-ProteinID:
XP_022929706
UniProt:
A0A6J1ENX2
LinkDB
All DBs
Position
Unknown
AA seq
1205 aa
AA seq
DB search
MTELIKFSVLSSLFDWIQRSKSSAKKRSKFRKFIDTFCSPADYFSAIRLILPSLDRERGT
YGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANVGNFALVAAEVLQRRQGMT
PGGLLIKELNDLLDRLALSENRAEKTAVLSTLIQKTNAQEMKWIVMIILKDLKLGVSEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRRQRHKRQDIEVGKAVRPQLASRVSNANAAWK
KLHGKEVVVECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYGHGMSDVIVQNVLATRCILD
GEMLVWDKSLNRFAEFGSNQEIARAAKDGFDSNRQLCYVAFDVLYVGDTSVIHRSLKERH
ELLRDVVKPVKGQLEILVPNGGLNSDCAGDPSWSIRAYNVDDVERFFKSTIENRDEGIVI
KDLSSKWEPGDRSGKWLKLKPDYIHAGSDLDALIIGGYYGSGRRGGEVAQFLMGLAERPP
SNAYPRRFISFCRVGTGLTDEELDSVVNKLKPYFRKSEYPRKTAPSFYQVTNNSKERPDV
WIESPEKSIILSITSDIRTIKSEVFAAPYSLRFPRIHRVRYDKPWHECLDVQSFVELVHS
SNGTTQRGTNNSGWQDSKRKYINSTGKGRKKSVSVVPSHLLQTDISGIKGDSLIFSNMLF
YIVNVPPTHSLDSLHKLIVENGGTFSMNLNNSVTHSVAADSKGIKYEAAKRHGDVIHYSW
VLECCSQKKLLPLMPKHFLFLSGHSKKKLEEEIDEFSDSYFWDLELADLKQLLSNVSRSE
DVKAIDYYREKYCPKHEWCIFSGCQIYFHPLKPSLKSDWDALLELSVRRLKVEVSFRGGK
VSDDRVSATHIVVFCIPGPPVKYEAVLKSCNEADKHVMLKDKTHIIGHQWLEDCLERAQR
LQEDAYSLNPNTKKSIEKLNSGIGSETPSASENIDNQQIPSPSKEYKDLGGNESASGQHM
LSHSTKGSGGKKRGRPAASSMQKGKSSIEQVRRVLPRRTKGPAKINEVESDSSDHTNEKT
NAETGNIGTLCSESLGKNEFRMLENERPVKKKRGSPAKNTQKGKARVEQVRRTRARIAKG
DGSDYTDVKTNAEEAEMERGNVGTVCKDNSKTEELKMLEDCDWKQKGKAIEQIDVADTKS
KNSENSEKLEVMTDPLQAMLLDMVPSLGMSETKSSSSSSSVLEEKQPAKKKVSYKDVASE
LLKDW
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgacggaactgatcaagttcagcgtgctttcaagtctgtttgattggattcagcgaagc
aagtcttccgccaagaagcgttccaagtttcgtaagtttatcgacaccttctgcagtcct
gctgactatttttctgccatccgcttgattctgcccagccttgatcgagagcgcggcacc
tatggcctcaaggagtctgtactcgccacttgccttattgacgctcttggcatgtctaga
gagtctgaggacgctcttcgtcttatcaactggcgcaaaggtggtgctaagactggtgct
aatgtcggtaatttcgctcttgttgcggctgaggttttgcagcgcaggcaaggaatgacc
cctggtggtctattaattaaagagttgaatgatttactggaccgtttggctttaagtgaa
aacagagcagagaaaaccgcagttctgtctactcttatacagaagacaaatgcacaggaa
atgaaatggattgtcatgataatcctcaaagatctgaaactgggagtcagtgaaaaaagc
atttttcatgagtttcatccagatgcagaagacttattcaatgtcacttgtgacttaaaa
ttggtttgtgaaaaactaagggatcgtagacaaaggcataagcgtcaggacattgaagtt
ggtaaagctgtacgacctcagttggcttcaagagtgtccaatgcaaatgctgcatggaaa
aagcttcatgggaaggaagttgtagtcgaatgcaagtttgatggtgaccgtattcaaatt
cataagaatggaactgaaatacactacttttcaaggaactttctcgatcactcagaatat
ggacatggaatgtctgatgttattgttcaaaatgttcttgccactaggtgtatacttgat
ggtgaaatgttggtgtgggataaatctttaaaccgttttgcagagtttggctcaaaccag
gaaatagcaagggcagcaaaggatggatttgacagcaatcgtcagttatgctatgtcgcg
tttgatgttctttatgttggagatactagtgttattcacaggagtttgaaagaaaggcac
gagcttctcagagatgttgtcaagcctgtgaagggtcaattggaaatcttagtacctaat
ggtggtcttaatagtgactgtgctggggatccttcttggtcaatcagagcttataatgtt
gatgacgtggaaaggttctttaagagtaccattgaaaatagagatgaaggtattgttatt
aaggacctgagttctaaatgggaacctggtgatcggagtgggaagtggttaaaattaaag
cctgactacattcatgcaggatctgacttggatgccctcatcataggaggttactacggc
tctggacggcggggtggggaggtcgctcaatttttaatgggtcttgctgagcgtccaccc
tcaaatgcatatcccagacggtttatttccttctgcagagtaggaactggacttactgat
gaggagttagattctgttgtaaataaactgaagccttattttcggaaaagtgaatatcca
aggaagactgcacccagcttttaccaagttacaaataattcaaaagaacgaccagatgtt
tggattgaaagccctgagaagtcaattatactttccattaccagtgatatacgaacaata
aaatctgaggtctttgcagcaccatatagcctaagatttccacgcatacaccgtgttcga
tatgacaaaccttggcatgaatgtcttgatgttcaatcttttgtagagcttgttcattca
agtaatggtaccacacaaaggggcacaaataatagtggctggcaagatagtaaacgaaag
tacattaattccactggaaagggaaggaaaaagagtgtttctgttgttccttctcattta
cttcagactgatatttcaggcattaaaggggactccttgattttctcgaatatgttattt
tacattgttaatgtgcctccaacccattctctcgattccttgcacaaattgatagtggag
aatgggggcacattctctatgaatttgaataattctgttacacactctgttgcagctgat
agcaaaggcatcaaatatgaggctgccaaacgtcatggagatgttatacattattcttgg
gtgttggaatgttgttcccagaagaaactactacctctaatgcccaagcattttctcttt
ctctctggtcactcaaagaaaaaattggaggaggaaattgatgaattttctgactcgtac
ttctgggatcttgaacttgcagacctgaaacagctattaagcaacgttagtagatcagaa
gatgtgaaagctattgactactacagggaaaaatattgtccaaaacatgaatggtgtatt
ttttctgggtgccaaatttactttcatcctttaaaaccatctttgaaatctgattgggat
gccctgttggagctttcagtaaggaggttgaaggttgaagtttccttcagaggtgggaaa
gtcagtgatgatcgtgtttctgctacccacattgtagtcttctgtatacctggaccgcct
gtaaaatatgaagcagtgttgaaaagttgcaatgaagcagataaacatgtcatgttgaag
gacaagactcatattattggacatcagtggttggaagactgtttggagagggcccaaagg
ttgcaagaagatgcatatagcttgaatcccaatacgaaaaagtcgatcgaaaagttaaat
tctggaataggctctgaaacaccatcggcctcagaaaatatagacaatcagcaaattcct
tctccttccaaggagtataaagatctgggaggaaatgaatcggcttcaggacaacacatg
ctctcacattcaactaagggatctggtggaaagaaaagaggaaggcctgctgcaagtagc
atgcaaaaagggaaatcgagtatcgaacaagttcgaagagttttgccccgaagaaccaag
gggcctgcaaaaataaatgaagttgaatcagacagcagtgaccatactaacgaaaagaca
aatgcagaaactggaaatattggaacactctgcagtgaaagcttaggaaagaacgagttt
cgaatgctggaaaacgagagacctgtcaagaagaaaagaggaagtcctgcaaagaacaca
caaaaagggaaagcaagggtggagcaagttcgaagaactcgggcacgtatagccaagggg
gacggcagtgactatactgatgtgaaaacgaatgcagaagaagctgaaatggagagagga
aatgttggaacagtatgcaaggataactcaaaaacagaggagcttaaaatgctagaagac
tgtgattggaaacaaaaggggaaggccattgaacaaattgatgttgctgacaccaaatcc
aagaattctgaaaattccgaaaagcttgaagtcatgactgatcctcttcaggccatgtta
ttagatatggttccaagtctaggaatgagtgaaactaaaagtagcagcagcagcagttct
gttcttgaggagaagcaaccagctaagaagaaagtgagctacaaggacgttgccagtgaa
ctgcttaaggattggtaa
DBGET
integrated database retrieval system