Cucurbita moschata (crookneck pumpkin): 111436208 Help Entry 111436208         CDS       T05248                                  Name (RefSeq) DNA ligase 4   KO K10777   DNA ligase 4 [EC:6.5.1.1] Organism cmos  Cucurbita moschata (crookneck pumpkin) Pathway cmos03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:cmos00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     111436208  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:cmos03400]     111436208 Enzymes [BR:cmos01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      111436208 DNA repair and recombination proteins [BR:cmos03400]  Eukaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     DNA Ligase 4 complex      111436208 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N BRCT_2 DNA_ligase_A_C BRCT PTCB-BRCT RNA_ligase DNA_ligase_IV Motif Other DBs NCBI-GeneID:  111436208 NCBI-ProteinID:  XP_022929706 UniProt:  A0A6J1ENX2 LinkDB All DBs Position Unknown AA seq 1205 aa AA seqDB search MTELIKFSVLSSLFDWIQRSKSSAKKRSKFRKFIDTFCSPADYFSAIRLILPSLDRERGT YGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANVGNFALVAAEVLQRRQGMT PGGLLIKELNDLLDRLALSENRAEKTAVLSTLIQKTNAQEMKWIVMIILKDLKLGVSEKS IFHEFHPDAEDLFNVTCDLKLVCEKLRDRRQRHKRQDIEVGKAVRPQLASRVSNANAAWK KLHGKEVVVECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYGHGMSDVIVQNVLATRCILD GEMLVWDKSLNRFAEFGSNQEIARAAKDGFDSNRQLCYVAFDVLYVGDTSVIHRSLKERH ELLRDVVKPVKGQLEILVPNGGLNSDCAGDPSWSIRAYNVDDVERFFKSTIENRDEGIVI KDLSSKWEPGDRSGKWLKLKPDYIHAGSDLDALIIGGYYGSGRRGGEVAQFLMGLAERPP SNAYPRRFISFCRVGTGLTDEELDSVVNKLKPYFRKSEYPRKTAPSFYQVTNNSKERPDV WIESPEKSIILSITSDIRTIKSEVFAAPYSLRFPRIHRVRYDKPWHECLDVQSFVELVHS SNGTTQRGTNNSGWQDSKRKYINSTGKGRKKSVSVVPSHLLQTDISGIKGDSLIFSNMLF YIVNVPPTHSLDSLHKLIVENGGTFSMNLNNSVTHSVAADSKGIKYEAAKRHGDVIHYSW VLECCSQKKLLPLMPKHFLFLSGHSKKKLEEEIDEFSDSYFWDLELADLKQLLSNVSRSE DVKAIDYYREKYCPKHEWCIFSGCQIYFHPLKPSLKSDWDALLELSVRRLKVEVSFRGGK VSDDRVSATHIVVFCIPGPPVKYEAVLKSCNEADKHVMLKDKTHIIGHQWLEDCLERAQR LQEDAYSLNPNTKKSIEKLNSGIGSETPSASENIDNQQIPSPSKEYKDLGGNESASGQHM LSHSTKGSGGKKRGRPAASSMQKGKSSIEQVRRVLPRRTKGPAKINEVESDSSDHTNEKT NAETGNIGTLCSESLGKNEFRMLENERPVKKKRGSPAKNTQKGKARVEQVRRTRARIAKG DGSDYTDVKTNAEEAEMERGNVGTVCKDNSKTEELKMLEDCDWKQKGKAIEQIDVADTKS KNSENSEKLEVMTDPLQAMLLDMVPSLGMSETKSSSSSSSVLEEKQPAKKKVSYKDVASE LLKDW NT seq 3618 nt NT seq  +upstreamnt  +downstreamnt atgacggaactgatcaagttcagcgtgctttcaagtctgtttgattggattcagcgaagc aagtcttccgccaagaagcgttccaagtttcgtaagtttatcgacaccttctgcagtcct gctgactatttttctgccatccgcttgattctgcccagccttgatcgagagcgcggcacc tatggcctcaaggagtctgtactcgccacttgccttattgacgctcttggcatgtctaga gagtctgaggacgctcttcgtcttatcaactggcgcaaaggtggtgctaagactggtgct aatgtcggtaatttcgctcttgttgcggctgaggttttgcagcgcaggcaaggaatgacc cctggtggtctattaattaaagagttgaatgatttactggaccgtttggctttaagtgaa aacagagcagagaaaaccgcagttctgtctactcttatacagaagacaaatgcacaggaa atgaaatggattgtcatgataatcctcaaagatctgaaactgggagtcagtgaaaaaagc atttttcatgagtttcatccagatgcagaagacttattcaatgtcacttgtgacttaaaa ttggtttgtgaaaaactaagggatcgtagacaaaggcataagcgtcaggacattgaagtt ggtaaagctgtacgacctcagttggcttcaagagtgtccaatgcaaatgctgcatggaaa aagcttcatgggaaggaagttgtagtcgaatgcaagtttgatggtgaccgtattcaaatt cataagaatggaactgaaatacactacttttcaaggaactttctcgatcactcagaatat ggacatggaatgtctgatgttattgttcaaaatgttcttgccactaggtgtatacttgat ggtgaaatgttggtgtgggataaatctttaaaccgttttgcagagtttggctcaaaccag gaaatagcaagggcagcaaaggatggatttgacagcaatcgtcagttatgctatgtcgcg tttgatgttctttatgttggagatactagtgttattcacaggagtttgaaagaaaggcac gagcttctcagagatgttgtcaagcctgtgaagggtcaattggaaatcttagtacctaat ggtggtcttaatagtgactgtgctggggatccttcttggtcaatcagagcttataatgtt gatgacgtggaaaggttctttaagagtaccattgaaaatagagatgaaggtattgttatt aaggacctgagttctaaatgggaacctggtgatcggagtgggaagtggttaaaattaaag cctgactacattcatgcaggatctgacttggatgccctcatcataggaggttactacggc tctggacggcggggtggggaggtcgctcaatttttaatgggtcttgctgagcgtccaccc tcaaatgcatatcccagacggtttatttccttctgcagagtaggaactggacttactgat gaggagttagattctgttgtaaataaactgaagccttattttcggaaaagtgaatatcca aggaagactgcacccagcttttaccaagttacaaataattcaaaagaacgaccagatgtt tggattgaaagccctgagaagtcaattatactttccattaccagtgatatacgaacaata aaatctgaggtctttgcagcaccatatagcctaagatttccacgcatacaccgtgttcga tatgacaaaccttggcatgaatgtcttgatgttcaatcttttgtagagcttgttcattca agtaatggtaccacacaaaggggcacaaataatagtggctggcaagatagtaaacgaaag tacattaattccactggaaagggaaggaaaaagagtgtttctgttgttccttctcattta cttcagactgatatttcaggcattaaaggggactccttgattttctcgaatatgttattt tacattgttaatgtgcctccaacccattctctcgattccttgcacaaattgatagtggag aatgggggcacattctctatgaatttgaataattctgttacacactctgttgcagctgat agcaaaggcatcaaatatgaggctgccaaacgtcatggagatgttatacattattcttgg gtgttggaatgttgttcccagaagaaactactacctctaatgcccaagcattttctcttt ctctctggtcactcaaagaaaaaattggaggaggaaattgatgaattttctgactcgtac ttctgggatcttgaacttgcagacctgaaacagctattaagcaacgttagtagatcagaa gatgtgaaagctattgactactacagggaaaaatattgtccaaaacatgaatggtgtatt ttttctgggtgccaaatttactttcatcctttaaaaccatctttgaaatctgattgggat gccctgttggagctttcagtaaggaggttgaaggttgaagtttccttcagaggtgggaaa gtcagtgatgatcgtgtttctgctacccacattgtagtcttctgtatacctggaccgcct gtaaaatatgaagcagtgttgaaaagttgcaatgaagcagataaacatgtcatgttgaag gacaagactcatattattggacatcagtggttggaagactgtttggagagggcccaaagg ttgcaagaagatgcatatagcttgaatcccaatacgaaaaagtcgatcgaaaagttaaat tctggaataggctctgaaacaccatcggcctcagaaaatatagacaatcagcaaattcct tctccttccaaggagtataaagatctgggaggaaatgaatcggcttcaggacaacacatg ctctcacattcaactaagggatctggtggaaagaaaagaggaaggcctgctgcaagtagc atgcaaaaagggaaatcgagtatcgaacaagttcgaagagttttgccccgaagaaccaag gggcctgcaaaaataaatgaagttgaatcagacagcagtgaccatactaacgaaaagaca aatgcagaaactggaaatattggaacactctgcagtgaaagcttaggaaagaacgagttt cgaatgctggaaaacgagagacctgtcaagaagaaaagaggaagtcctgcaaagaacaca caaaaagggaaagcaagggtggagcaagttcgaagaactcgggcacgtatagccaagggg gacggcagtgactatactgatgtgaaaacgaatgcagaagaagctgaaatggagagagga aatgttggaacagtatgcaaggataactcaaaaacagaggagcttaaaatgctagaagac tgtgattggaaacaaaaggggaaggccattgaacaaattgatgttgctgacaccaaatcc aagaattctgaaaattccgaaaagcttgaagtcatgactgatcctcttcaggccatgtta ttagatatggttccaagtctaggaatgagtgaaactaaaagtagcagcagcagcagttct gttcttgaggagaagcaaccagctaagaagaaagtgagctacaaggacgttgccagtgaa ctgcttaaggattggtaa

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