KEGG   Cyclobacterium marinum: Cycma_1183Help
Entry
Cycma_1183        CDS       T01592                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cmr  Cyclobacterium marinum
Pathway
cmr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cmr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Cycma_1183
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cmr03400]
    Cycma_1183
Enzymes [BR:cmr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Cycma_1183
DNA repair and recombination proteins [BR:cmr03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Cycma_1183
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AEL24955
UniProt: G0IY51
LinkDB All DBs
Position
1393330..1395756
Genome map
AA seq 808 aa AA seqDB search
MGLKAYREKRSFNDTSEPKGVVENTHQFRFVVQRHRARKLHYDLRLEIDGVLKSWAVPKG
PSMNPRDKRLAVQTEDHPVAYLSFEGLIPKGNYGAGKMTIWDEGNFQSLQQPNDLCKDHK
KGKLKIIFHGSKLKGIFTLVRSSSMNKKDQWLLIKHDDAFATDLDYDAEDFNEEAFSSGP
GENSKKLDLKSLIKPMLASPGTKIFNDKDWIYELKYDGYRAIANIRNDKVELYSRNGISL
NEKFQPIYKELKKIEHTAILDGEIVVLDKNGLPQFNSLQNYDKQSTKGRLVYYVFDLLHL
NDHDTLGLPLIDRKQLLKDLIPENTHIRYCDHVETMGITVYDRAIDMGMEGVIAKKANST
YDLNSRSANWLKFKKIENTETIICGYTLSNKKSRKFGSLILGMVEEGQLTYVGTCGTGFS
EEQLTEMYFKFEVLKTKNPVFNIRKHLKGREAVWLIPKLICEVKFSEWTSSKVMRHPVFL
RLREDKNLNFEPNQIPLKKTASKKTGEDAFSLKVDDIMVSITHPEKSYWPESGYTKYDLL
DYYIQMSDLILPYLKDRPESLHRHPSGIHGESFYQKDHEHLPEWIDTHGIHSSSSDKEIN
YLLCQQKATLLYLNNLGCIELHPWHSTIYQLDYPDYAILDLDPSEENTFEEVMETALATK
EILKQANIKGYCKTSGSSGLHIYLPMGGKYTYEEARNFTKLLCYFIQEKLPKLTTLERSL
KKRGPKIYLDYLQNRKGQTIVAPYSLRPRLHAPVSMPLLWSELKPGLKITDFTIKTVPKL
MEDRKDSFKPVLGKAIDMSSAIAHLNNL
NT seq 2427 nt NT seq  +upstreamnt  +downstreamnt
atgggactcaaagcataccgtgaaaagcgaagctttaatgacacatctgaacctaaaggt
gtggttgaaaacacccatcaattcaggtttgttgtgcaaaggcaccgtgcccgaaagttg
cattatgacctgagactggaaatcgatggagtcctcaagagctgggcagtacctaaaggg
ccttccatgaatccccgagacaaacgactggctgtacaaacggaagatcatccggttgca
tatttgagttttgaaggtcttattccaaagggcaactatggtgcgggaaaaatgaccata
tgggatgaaggaaatttccaaagcctacagcaaccaaacgatctctgtaaagaccataaa
aaaggaaaactgaaaatcatttttcacggcagtaaactaaaagggatttttactttggtt
cggtcttcctcaatgaataaaaaagaccaatggttgctcattaaacatgacgatgccttt
gctaccgacctggattacgacgcagaagattttaatgaggaagccttttcttcggggcca
ggtgagaattcgaaaaagctggatttaaaatcgctaataaaacccatgttagcctcgcca
ggcactaaaatttttaatgacaaagactggatatacgaattaaaatatgatggttatcgt
gcaatagctaatatccggaatgacaaggtggagctctattcccgcaatggaatttctctc
aatgaaaaatttcaacctatttataaggagcttaaaaaaattgagcataccgcaatccta
gacggcgaaatagtggtgctggacaaaaatggtcttcctcaatttaattcccttcaaaat
tatgacaaacaatcaaccaaaggaagattggtttattatgtattcgatctactccattta
aacgatcacgataccttgggacttcccctcatcgaccgtaagcaattgttaaaagatttg
attccggaaaacactcatatacgctattgcgatcatgtcgaaaccatgggaattacggtt
tacgaccgagccattgatatgggtatggaaggtgtaatcgccaaaaaagccaattctaca
tatgacctaaactcccgctctgccaactggttaaagtttaaaaagattgaaaacacagaa
acgattatatgtggctacacgctttcgaataaaaaatcacgaaagtttggctcattaatt
ctaggaatggttgaagagggtcaactgacttatgttggaacttgtggtacgggtttttca
gaagagcagctgacagaaatgtattttaaatttgaagtccttaaaactaaaaatccggta
ttcaatatacgcaagcacctgaaaggacgtgaagcagtgtggttgatccctaaactgatt
tgtgaagtaaaattttcggagtggacttcttctaaagtaatgcgacatcctgttttttta
aggttaagggaggataaaaatttgaattttgaaccaaatcaaattcccttaaaaaaaaca
gcttctaaaaagacaggcgaggatgccttttcattgaaagtggatgatatcatggtatct
atcactcatccggaaaagagctattggccggaatcgggttataccaaatacgacttgttg
gattattacattcaaatgtccgacttgattttaccttacctgaaggatcgtccggaaagt
ttacacaggcatcccagtggcattcacggtgaatctttttatcaaaaagaccatgaacat
ttacctgaatggattgatactcacggcattcattcatcatcttcagataaagaaatcaat
tatttattatgtcagcaaaaagccactttattatatttaaataatttgggatgcattgag
ttacatccctggcattctactatctatcaattagactatcctgactatgctatccttgac
ttggatccttccgaagaaaatacctttgaagaggtcatggaaactgctttggcaactaaa
gaaatacttaaacaagcaaatatcaaaggatattgtaaaacatcaggttcatccggtttg
cacatttatcttccaatgggaggaaaatacacctatgaggaagcaagaaacttcaccaag
ctactctgctatttcatacaagaaaaacttcctaagctaactactctggaacgctcactt
aaaaagaggggacccaaaatttacctggattatttacaaaaccgcaaaggacaaaccatc
gttgctccttacagtttgaggcccaggttgcatgccccggtatccatgccactgctgtgg
tccgaactcaaacccggattaaagatcaccgatttcaccatcaaaaccgttccaaagtta
atggaagatagaaaagacagttttaaaccagttctaggtaaagctatcgatatgagcagt
gccatagcacacctcaacaatttataa

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