KEGG   Cordyceps militaris: CCM_01054Help
Entry
CCM_01054         CDS       T03108                                 

Definition
(RefSeq) DNA ligase (Polydeoxyribonucleotide synthase)
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cmt  Cordyceps militaris
Pathway
cmt03030  DNA replication
cmt03410  Base excision repair
cmt03420  Nucleotide excision repair
cmt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cmt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CCM_01054
   03410 Base excision repair
    CCM_01054
   03420 Nucleotide excision repair
    CCM_01054
   03430 Mismatch repair
    CCM_01054
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cmt03032]
    CCM_01054
   03400 DNA repair and recombination proteins [BR:cmt03400]
    CCM_01054
Enzymes [BR:cmt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CCM_01054
    6.5.1.6  DNA ligase (ATP or NAD+)
     CCM_01054
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CCM_01054
DNA replication proteins [BR:cmt03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CCM_01054
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CCM_01054
DNA repair and recombination proteins [BR:cmt03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CCM_01054
   NER (nucleotide excision repair)
    Other NER factors
     CCM_01054
   MMR (mismatch exicision repair)
    Other MMR factors
     CCM_01054
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 18163087
NCBI-ProteinID: XP_006666275
UniProt: G3J2R4
LinkDB All DBs
Position
Unknown
AA seq 861 aa AA seqDB search
MAPKQSTLGYVKPSQTSIGKFFGAKSDGPARQSKLAFSTKPKKEAEAADDGSSTKENTDP
DTDSKKRIRSDAKNESKAPIKKEEDDEDAPVAKRPRRRRPKVEDDDEDVVPTTEPIKKQE
QMDSPVKVESSVEPSPEPPVKKEKRADKEFKEAAASESGSDVEGDIEGEEKPEVVAKARK
LAQTKLSSKAKDPYPDWKAGTPVPYAALCTTFSLVEMTTKRLIIMEHCALFLRQVMRLTP
NDLLPTVLLMINKLAPDYAGIELGIGESLIMKAIGESTGRSLQVIKTDQKDIGDLGLVAL
KSRSTQPTMFKPKPLTVRGVHQGLMGIATISGNGAQGRKVDGIKKLLSASDAHNTGKVDI
TKDKGGPSEAKYIIRFLEGKLRLGLAEKTVLVSLAQAIVCHEADQRGKLPSTSDMEKGES
ILKTVYSELPSYDVIIPAMLSHGILNLHEHCKLQPGVPLKPMLAKPTKAITEVLDRFEGQ
TFTCEYKYDGERAQIHYVAKDAPQELSQAAPGANKDAAKGVASIFSRNSEDLSKKYPDIL
AKLHSWVKDDTKSFVLDCETVAWDTEEKTVLPFQQLMTRKKKDVKVEDVKVKVCVFAFDL
LYLNGQPVVEKSLRERRELLQQAFTPVEGEFSFATSMDGQELDEIQVFLDESVKASCEGL
MVKMLDGTESGYEPSKRSRNWLKIKKDYLAGVGDSLDLVVLGAYYGRGKRTSVYGAFLLA
CYNPGSDTYETVCNIGTGFSEQVLEELHAALSAIVIDRPKPFYAHSTGNQHQPDVWFEPQ
YVWEVKTADLTLSPRYKAGCKEGVDPAGGKGISLRFPRFIKIRDDKKPDEATSSRQVAEM
YRKQESVTKNKGPAVDDDFEY
NT seq 2586 nt NT seq  +upstreamnt  +downstreamnt
atggcgcccaagcagtccactttggggtatgttaagccttctcagacgtcgattggcaag
tttttcggtgccaagtcggacgggccagctcgacagtccaagcttgctttctcaacaaag
ccgaagaaagaggctgaagctgccgacgatggctcaagtaccaaagagaatactgatcca
gataccgattcaaaaaagcgaattcgctcggatgcaaagaacgagtcgaaagcaccgatc
aaaaaagaagaagacgacgaagatgctccagtcgcgaagcgcccccgaagacgccgcccc
aaggtcgaggatgatgatgaggacgtggtgccaaccacggaaccaatcaaaaagcaggaa
cagatggactcaccggtcaaggtcgaatcctctgtcgagcccagccccgagccgcccgta
aagaaggagaagcgcgccgacaaggagttcaaggaagcagccgcctctgaatccggctcc
gacgtcgaaggcgatatagaaggggaggaaaagcccgaagttgttgcaaaggcgcgtaaa
ctggctcagacgaaactcagctcaaaggccaaggacccataccccgattggaaggctggc
actcccgtcccctatgctgccttgtgtacaaccttttccctcgtcgaaatgacgaccaaa
cgcttgatcatcatggagcattgtgcgcttttcttgcgtcaagtcatgcgcctgaccccc
aatgaccttcttcccaccgtcctgctcatgatcaacaaactggccccggactatgctggt
atcgaactcggtatcggcgagtcgctaattatgaaggccattggcgagtcgactgggaga
agcttgcaagtcatcaagaccgatcagaaagacattggcgatctcggcctggtcgctttg
aagagcagatccacgcaaccaaccatgttcaagccaaaaccgctgacggttcgtggcgtc
caccagggcctgatgggtatcgctactatctcgggcaatggcgcccaaggccgcaaagtt
gacggtatcaagaagcttctctctgcttctgatgcccacaacaccggcaaggttgacata
acaaaggacaagggtggccccagcgaagccaagtacattattcggttcctggaggggaaa
cttcgactaggcctcgcagaaaagacggtcctagtttctcttgctcaggctattgtctgc
cacgaggcagaccagcgcggcaagctgcccagcacatcagatatggaaaagggcgagagc
atcctcaagacggtctacagcgagcttcccagttacgacgtcattatccctgctatgctc
tctcacggtatcctcaacctgcacgagcactgcaagttgcaacccggtgtgccgctgaag
cccatgttggccaagcccaccaaggccatcacagaagtcctggatcgcttcgagggccag
acatttacatgcgaatacaagtacgacggcgagcgtgcacaaattcactacgttgccaag
gacgctccccaagaactcagccaggccgcgccgggcgccaacaaggatgccgccaagggc
gtcgccagcattttctcccgcaactcggaagacctgtccaagaagtatcccgacatcctc
gccaagctgcacagctgggtcaaggacgacacaaaaagcttcgtgctcgactgtgagacg
gtcgcgtgggacacggaagaaaagacggtgctgccttttcagcagctcatgacgagaaag
aaaaaggacgtcaaggtggaagacgtcaaggtcaaggtctgcgtcttcgcctttgatctg
ctctacctaaacggccagcccgttgttgaaaagtcgctgcgagagcggagggaactcttg
caacaggcatttacgcccgtagaaggcgagttttcgtttgccacttcgatggacggccaa
gagctcgatgaaattcaagtgttcctcgacgagagcgtcaaggcttcctgcgagggcctc
atggtgaagatgttggacggcacggagagtggatacgagcccagcaagagaagtcggaac
tggctcaagatcaagaaggactacctcgccggcgtcggcgactcgctggatctcgtcgtt
ctgggcgcctactacggccgcggcaagcgcacgtccgtctacggcgcgttcctgctcgcc
tgctacaacccgggctcggacacgtacgagacggtgtgcaacattggcacgggcttctcg
gagcaggtgctcgaggagctgcacgcggccctgtccgccatcgtcattgaccgccccaag
cccttttacgcccactcgaccggcaaccagcaccagcccgacgtctggttcgagccccag
tacgtctgggaggtcaagacggccgacctcaccctcagcccccgctacaaggccggctgc
aaggagggcgtcgaccccgccggcggcaagggcatcagcctccgcttcccccgcttcatc
aagattcgcgacgacaagaagcccgacgaggccacgtccagccgccaggtcgccgagatg
taccgcaagcaggagagcgtcaccaagaacaaggggccggctgtggatgatgactttgag
tattga

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