KEGG   Chelonia mydas (green sea turtle): 102943387Help
Entry
102943387         CDS       T02989                                 

Definition
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cmy  Chelonia mydas (green sea turtle)
Pathway
cmy03030  DNA replication
cmy03410  Base excision repair
cmy03420  Nucleotide excision repair
cmy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cmy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102943387
   03410 Base excision repair
    102943387
   03420 Nucleotide excision repair
    102943387
   03430 Mismatch repair
    102943387
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cmy03032]
    102943387
   03400 DNA repair and recombination proteins [BR:cmy03400]
    102943387
Enzymes [BR:cmy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102943387
    6.5.1.6  DNA ligase (ATP or NAD+)
     102943387
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     102943387
DNA replication proteins [BR:cmy03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    102943387
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     102943387
DNA repair and recombination proteins [BR:cmy03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     102943387
   NER (nucleotide excision repair)
    Other NER factors
     102943387
   MMR (mismatch excision repair)
    Other MMR factors
     102943387
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 102943387
NCBI-ProteinID: XP_007072300
LinkDB All DBs
Position
Un
AA seq 952 aa AA seqDB search
MQRPITSFFQPMKAVKEEEKIRLPAEGDSASQLSEAAVIQRNGVSLSVDSPVKSAAKRPL
RRVLESDSDEEEAVLTAQAEVDPIQEKSLEKASSKEEPMQTPQSDLSADSPSPSSSHSAG
DSPAPSYSPALXEADSKLCSSARKQIPKRKIELPTSRENNRDEEPSAKRCREEQGPGDEV
GRGAKEEAAMDMQEVKGQHSEIELAEVNGTLEEGAVNKGEEDCTKGGAQEKPEPPKPSRA
ISSFFAPKKVTVARAGKADEHAAVEIPPAPTGSATASSNGSDGTAGSFSKPVVPLDPMEY
NPSKSSYHPIQDACWGHGQRVPYLAVARTFERIEEVSARLKNIETLSNLFRSVIALSPSD
ILPCIYLCLNRLGPAYKGLELGIGETILMKAVAQATGRQLDQIKAEAQEKGDLGLVAESS
RSNQRTMFTPPKLSAAGVFSKLQEIARMTGSASMNKKIDIIKGLFVACRHSEARYITRSL
GGKLRIGLAEQSALSAIAHAVSLTPPAQGFPPEVLDAGQGKSAEARKTWLEEQTQILKQT
FCELPSYDIIVPILLEHGVESLPQHCKITPGIPLKPMLAQPTKGIGEVLKRFEEAAFTCE
YKYDGERAQIHILENGDVHIYSRNQEDNTSKYPDIISRIPKVKKGSVRSCILDAEAVAWD
PEKRQIQPFQVLTTRKRKDVEAAEIKVQVCLYAFDILYLNGESLVKKPFSRRRQLLHESF
VETEGEFLFATSMDTSSLDEISEFLDQSIKDSCEGLMVKSLEVDATYEIAKRSHKWLKLK
KDYLEGVGDTLDLVVIGAYLGKGKRVGMYGGFLLACYDEESEEYQSICKIGTGFTEEILE
KHYSFLKDHVLEKPRPYYRWDSSTEPNHWLAAVQVWEVKCADLSISPVHKAAIGLVDEEK
GISLRFPRFLRVRDDKKPEEATTSSQVAELYKQQQQIQNQQPVEKAEEEDFY
NT seq 2859 nt NT seq  +upstreamnt  +downstreamnt
atgcagcgccccatcacgtcatttttccagcccatgaaggcagtgaaggaggaggagaag
atcagactgccagcagaaggggactcagccagccagttgtcagaggcagctgtgatacag
agaaatggcgtaagcctctctgtggactccccagtgaaatccgctgccaagaggcccctg
cgccgggtcttggagagcgacagtgacgaggaggaggccgtgctgacagcccaagcagag
gtggatcccatacaggaaaaaagcttagagaaagccagcagcaaggaggagcctatgcag
actcctcagtctgatctttctgcggatagcccctcgccaagcagtagccactccgctgga
gacagcccggccccttcttactcccctgccctnnaggaggctgactctaaactctgctct
tcagctcgcaagcagatccccaaacgcaaaatagagctgccaactagcagggagaacaac
agggatgaggagccaagtgccaagagatgccgggaagagcaaggcccaggagatgaggta
ggcaggggagcaaaggaagaagcagccatggacatgcaagaggtgaaaggtcagcattcg
gagatagaactggctgaagttaatggcactttggaggagggggctgtgaacaagggagaa
gaggactgcactaaagggggagcccaggagaagcctgagccacccaagcccagcagagcc
atctccagcttctttgcccccaagaaggtgacagtggcaagggcagggaaggcagatgaa
catgcagcagtggagataccacctgccccaactggctcagccacagcgagcagcaatggg
agtgatggcacagctggcagtttctccaagccagttgtgccactggaccctatggagtac
aatccttcgaagagcagctaccaccccatccaggatgcctgctgggggcatggtcagagg
gtcccctacctggctgtggctcggacctttgagcggatcgaggaggtgtctgcccggctg
aagaacattgagaccctgagcaacctcttccgctcggtgatcgccctgtcgccatccgac
attctgccctgcatctacctctgcctgaaccgcctgggccctgcctacaaggggctggag
ctgggcatcggcgagaccatcctcatgaaggctgtcgcacaggcaacgggccgccagctg
gatcagatcaaagccgaggcccaggagaagggggatctgggcttggtagcagagagcagc
cgcagcaaccaacgcaccatgtttacgccgcccaagctgagtgctgctggggttttcagc
aagctacaggagattgccaggatgacaggcagtgcttccatgaacaagaagatcgacatc
atcaaagggctgtttgtggcctgccggcactcggaagctcgctacatcactcggtccctg
ggcgggaagcttcggattgggctggcagagcagtcagcgctgtcagccattgcccatgcc
gtgtctcttactcccccagcacaagggtttcccccagaggtactggatgctggccagggc
aagtctgcagaggcacgcaaaacctggctggaggagcagacccagatcctcaagcagacc
ttctgtgagttgcctagctatgacatcatagtgcccatcctgctggagcacggagtggag
agcctgccacagcactgcaagatcaccccagggatccccctgaagcccatgctggcccag
cccaccaagggcattggggaggtgctgaagcgctttgaggaggctgccttcacctgcgag
tacaagtatgacggggagcgagcccagatccacatcctggagaatggcgatgtgcacatc
tacagccgcaaccaggaggacaacacctccaaataccctgacatcatcagccgcatcccc
aaggtgaagaagggcagtgtgcggtcgtgtatcctggatgctgaggccgtagcctgggac
cctgagaagaggcagattcaacccttccaggtcctgaccacgcggaagcgcaaggatgtg
gaagctgctgagattaaagtgcaggtgtgtctgtatgccttcgacattctgtacctcaat
ggggagtccctagtgaagaagccattttccaggcgccgtcagctgctgcacgagtctttt
gtggagacggagggggagttcctgtttgccacctccatggacacctccagcctggacgag
atctctgaatttcttgaccagtccatcaaagactcctgcgagggcctcatggtcaagtcc
ctggaggtggatgccacgtacgagatcgccaagagatcccacaagtggctgaagctgaag
aaggattacctggaaggtgttggtgacactctggacttggtggtgattggtgcctacctg
ggcaagggcaagcgagtaggcatgtatggcggcttcctgctggcctgctacgatgaggag
agtgaagaataccagagcatctgcaagattgggactggcttcacagaggagatcctggag
aagcattacagcttcctgaaggaccacgtgctagagaagccacggccctattaccgctgg
gatagcagcactgagcccaaccactggctggcagctgtgcaggtgtgggaagtgaagtgc
gctgacctgtccatctctcctgtgcacaaggcagctataggtctggtggatgaggagaag
ggcatctccctgcgctttccccggttcctgcgcgtgcgtgatgacaagaagcctgaggaa
gccaccaccagttcccaggtagctgagctctacaagcagcagcagcagattcagaaccag
cagcctgtggagaaggctgaggaggaggacttctactag

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