Cryptococcus neoformans var. neoformans JEC21: CNA00090
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Entry
CNA00090 CDS
T00243
Name
(RefSeq) conserved hypothetical protein
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
cne
Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03018
RNA degradation
cne03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNA00090
09123 Folding, sorting and degradation
03018 RNA degradation
CNA00090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cne03019
]
CNA00090
03041 Spliceosome [BR:
cne03041
]
CNA00090
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CNA00090
mRNA degradation factors
5'-3' decay
Lsm complex
CNA00090
Spliceosome [BR:
cne03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CNA00090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
3254004
NCBI-ProteinID:
XP_024511809
LinkDB
All DBs
Position
1:join(30054..30174,30262..30289,30383..30455,30665..30697)
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AA seq
84 aa
AA seq
DB search
MASTILPLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITET
DLGDTLLNGNNIAMLIPGGKGPKA
NT seq
255 nt
NT seq
+upstream
nt +downstream
nt
atggccagtacaatcctccccctcgaacttgtcgacagatgtatcggctcccctatctgg
gtcttgatgaagaatgaacgagagtttactgggactttgatgggtttcgatgactatgtt
aacatggttttgaaagatgtcaaggaatacgaagttactgcttcgggaatcacagagacc
gatcttggggatactttgttaaacgggaacaacatcgccatgcttataccaggtggcaag
ggacccaaggcttag
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