Cryptococcus neoformans var. neoformans JEC21: CNA01730
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Entry
CNA01730 CDS
T00243
Name
(RefSeq) cleavage/polyadenylation specificity factor, putative
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cne
Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CNA01730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cne03021
]
CNA01730
03019 Messenger RNA biogenesis [BR:
cne03019
]
CNA01730
Transcription machinery [BR:
cne03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CNA01730
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CNA01730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
CFIA_Pcf11
zf-C2H2_6
zf-C2H2_4
Thiopep_pre
Motif
Other DBs
NCBI-GeneID:
3253441
NCBI-ProteinID:
XP_566538
UniProt:
Q5KPS3
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All DBs
Position
1:join(466848..467081,467139..468106,468154..468328,468392..468628,468678..468899)
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AA seq
611 aa
AA seq
DB search
MAYQAHQAYQQAPYYPPPPVQPTTDVFRRQYADRLRALTFNSRPIIQDLSMLAMAARDRN
DWNGMQAVVEEIELAVLRALPQQKLPLLYLLDSISKNVGPPYTTRLLQAIVPRLYIKTYR
EVDGVTKTKMEEMIGLWRTGGPGGSELYGSHVREQVERELFGSAGIQNFKVPNRQQVQVL
LNAALDNKRREVAMRPGDVVLGRQMNALLGIGELLSTTNVQPQELSMIVEQLKSMAPPSV
APTPTQVSVTPSWGPSPSVNDLAPSNLPPFPPKLPAVNGNGYTNVALPPFPSNIPTPLGT
ISTPPVTSSQTPIPGNQRSLTPVMAPASLAPVSSIVPSVPSIPVDVARILQTLNKSGIGS
QPQTPDVDRGTPGPNMVPAIEAYEDMILRLDIKLKSIDLNAPHKLSFAHLSHRCQQCGMR
FPSANAAFDAHMDWHFRRNKKERESGGRGAHRRWLPRVEQWINDATTLPSTAASSSQTEK
ATVSAERLAQLRQKWVKVPQDSKKAASVCPVCKEAFRAEWSDSEEEWIWKNALAINGIFY
HATCRAEQTSALKRLKAADPNRRTSSSASPRTTPSNEGLKPEAQKRKVEGMDIEHEEGSK
RVKVEEIVGDI
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggcctatcaagcccatcaagcctatcaacaggccccatattaccctccgcctcctgtc
cagcctacaactgatgtatttcggaggcagtatgcagatagattgagggccctcacattc
aactcgaggcctattattcaagatctgtcgatgttagcgatggcggcacgagatcgcaat
gattggaacggaatgcaggctgttgtggaggaaatagagttggctgtcttgagagctctt
ccccaacagaagcttcctttgctttatctgcttgattccatctccaagaatgttggaccc
ccttatacaacccgtctgcttcaggcaatcgtacctcggctatatataaagacgtatcgt
gaggtcgatggcgtgacgaagacaaaaatggaagaaatgatcggtctctggcgcactgga
gggcctggtggttccgagttgtacggttctcatgtcagagaacaggtggaaagggaatta
tttgggtcagcaggcattcaaaacttcaaagttcccaatcgacagcaagtccaagtgctt
cttaatgcagctttggacaataaacgacgtgaggtggcgatgagacctggtgatgtggtt
cttggtcggcagatgaatgcattgttgggtatcggggagctgcttagcacgacgaacgta
caacctcaggagctgagtatgatagtagagcagctgaagtcgatggcgcctccatcggtg
gctcctactccgactcaagtatctgtcacaccttcttggggaccctccccctccgtgaat
gacttggccccctcaaatctcccgccctttcctccaaaacttcctgctgttaatggcaat
ggatacactaacgttgccttaccaccgttcccctcaaatataccaacaccactcggaact
atttccacacccccagtgacaagttcccaaactcctattcctggcaaccaacgctcgtta
actcccgtcatggcacctgcgtcccttgctcctgtgtcctctattgtaccatctgtacca
agtattcctgttgatgtcgctagaattcttcagactttaaacaaatcaggaatcggtagc
caaccgcagacccccgatgttgacagagggacgccaggaccaaatatggttccagcaatc
gaggcttatgaggatatgattttacgattggatataaaactaaaatcaattgatctcaat
gccccccataaattgtctttcgctcatctttctcaccgttgtcagcaatgtggtatgaga
tttccttcagccaatgccgcatttgatgcccacatggattggcatttcagaagaaataag
aaagagcgcgagtcggggggaagaggtgcccatcgaaggtggcttccgcgggttgagcaa
tggatcaatgatgctaccactcttccatctaccgcggcgtcatccagtcagactgaaaag
gctactgtctcagcagagcggttagcgcaactgcgacaaaaatgggtgaaggtgcctcaa
gattctaaaaaggctgcgtcggtgtgcccagtgtgcaaagaagcttttagagcagaatgg
tctgatagtgaagaagaatggatatggaaaaacgcattagccatcaatggcatcttttat
cacgcaacttgtcgagcggagcaaacatctgctttaaaacgcctcaaagctgctgatccc
aatagacgcacatcttccagtgctagtcctaggacaacaccgtccaatgaaggcctgaag
ccagaagcgcaaaagagaaaggttgaagggatggatatagaacatgaagagggctccaaa
agagttaaagtggaggaaattgtgggtgacatataa
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