KEGG   Cryptococcus neoformans var. neoformans JEC21: CNI04170Help
Entry
CNI04170          CDS       T00243                                 

Definition
(RefSeq) DNA ligase, putative
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cne  Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03030  DNA replication
cne03410  Base excision repair
cne03420  Nucleotide excision repair
cne03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CNI04170
   03410 Base excision repair
    CNI04170
   03420 Nucleotide excision repair
    CNI04170
   03430 Mismatch repair
    CNI04170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cne03032]
    CNI04170
   03400 DNA repair and recombination proteins [BR:cne03400]
    CNI04170
Enzymes [BR:cne01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CNI04170
    6.5.1.6  DNA ligase (ATP or NAD+)
     CNI04170
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CNI04170
DNA replication proteins [BR:cne03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CNI04170
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CNI04170
DNA repair and recombination proteins [BR:cne03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CNI04170
   NER (nucleotide excision repair)
    Other NER factors
     CNI04170
   MMR (mismatch exicision repair)
    Other MMR factors
     CNI04170
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 3259559
NCBI-ProteinID: XP_572602
UniProt: Q5KB11
LinkDB All DBs
Position
9:complement(join(1107575..1107742,1107795..1108142,1108195..1108425,1108481..1108663,1108727..1108938,1108997..1109082,1109141..1109216,1109267..1109429,1109484..1109585,1109640..1109780,1109839..1110010,1110061..1110129,1110178..1110493,1110549..1110686,1110734..1110740))
Genome map
AA seq 803 aa AA seqDB search
MSDIEYPVKSNIRKKRTVILSDDEDEGLGPSVIKEQVSSPKHSHLSDEETEPPRKVAKTS
SKVAPIFAPKEKKEKPSPKTSSALSKAPAKKIEVKSKGEKPLASIFTKATRKPEPKDDDE
MSDEVKQKGKDEEEEDEIYDEVEDKQEGEAAVKLASIFTKNQKSVPVADKGWKDGEAVPY
PALVSTFEKIEATTKRLEILEFLTQFLLVVAKRDTATDAKGSMLLKVVYLCINRLCPDYM
GIELGIGESLLIKAIAESTGRAMPKIKEDLKKEGDLGKVAMNSRNTQSTMFKPKPLTVPY
VFQCLTDIAKASGNASQAKKVGIIKKLLAACQGTEAKFIIRSLEGKLRIGLADKTVVVAL
AHAIVLKTIGDKKPPPEKLAIMLEQGAETVKAVYSELPSYDLVIPALLQGGVEGLRERCK
LTPGVPLKPMLAKPTKAITEVLDRFEGKEFTCEYKYDGERAQVHLLEDGTISVFSRNSEN
MSAKYPDLVDQIPRSMKPTAKTFVIDAEAVAYDLETKKILPFQDLSRRKRKDVKAEDITV
RVHIFAFDLLYLNGESLLAKELKERRQLLQEHFQPVESEFAFAKSSDGSTTEEIQALLEE
SVKDGCEGLMVKMLTSESSTYEPSRRSMNWLKLKKDYLSGVGDSLDLVVVGAYHGKGKRT
AVYGAFLLACYDPDSEHYQTICKIGTGFSEEILTQFYELLKPLELEVVRGDIEVGGAKPD
VWFEPRVVWEVLTADLSLSPIYAAAHGVIDSRGISLRFPRFIRIRDDKSADEATTAEQVS
EFYQRQISAGGKKGAGADVDDFW
NT seq 2412 nt NT seq  +upstreamnt  +downstreamnt
atgagcgacatagagtatccagttaagtctaatatcaggaaaaagaggacggttattctt
tcggatgacgaggacgaaggacttggtccatctgtgattaaggagcaagtctcgtctccc
aaacattctcatctatctgatgaagagacggagcctccccggaaagttgcaaaaacgtca
tccaaagtcgcgcctatctttgctcccaaagagaagaaagaaaaaccatctcccaagact
tcatcagctttatctaaagcacctgccaagaagatagaagtaaagagcaagggtgaaaaa
ccacttgcatcaatattcacaaaagccacacggaagcctgagcctaaggatgacgacgaa
atgtcggacgaggtgaaacaaaaggggaaagatgaggaagaggaggatgagatatatgat
gaagttgaggataagcaggagggagaggccgctgtcaaactggcctcaatctttaccaag
aatcaaaagtctgtccctgtggctgacaagggctggaaagacggcgaagctgtcccatat
cccgctcttgtatcaacgttcgaaaaaattgaggctacgactaagcgattagagatcctc
gaattcttaacccagtttttactcgttgttgccaagagagatacagccacagacgccaaa
gggtctatgctccttaaagtggtctatctttgtatcaacaggctatgccccgactatatg
ggtatcgaacttggtattggagaatcattattgatcaaggccattgcggagagcacaggg
cgggctatgcccaagatcaaagaagatttaaagaaggaaggagacctcggaaaggttgcc
atgaactctagaaacactcaatcaaccatgttcaaacccaaacctttgacagtaccatat
gttttccaatgtctcactgatatcgcaaaggctagcgggaacgcgtcacaagcaaagaaa
gtaggcattattaagaaactccttgctgcttgccaaggcaccgaggccaaatttatcatc
cgatccctcgaaggaaaattacgaatcggtcttgccgacaagacagtcgtggttgccttg
gctcacgctatcgtcctgaagacaattggtgacaaaaaaccgccacctgaaaaacttgct
atcatgctggaacagggcgctgagactgttaaagctgtctatagtgagcttccatcgtac
gacctggtaatccctgctcttctccaaggaggcgtagaaggtttgagagaacgctgtaaa
cttactccaggcgttcctctcaaacctatgcttgctaagccgacgaaagccatcacagag
gtccttgaccgtttcgaaggcaaggaattcacttgcgagtacaagtacgatggagaacgt
gcccaggtccacctgttggaagatggtaccatttctgtgtttagtagaaattcggaaaac
atgagtgccaagtatcccgatctggtggatcaaataccgaggtctatgaaacctactgcc
aagacgtttgtcatcgatgccgaagccgttgcttatgatttggaaaccaagaagattctt
cctttccaagacctgagtaggcgaaagcgaaaggacgtcaaggccgaggacatcacagtg
cgggtgcatatctttgcgttcgatttgctctatctcaatggagagagtcttctcgctaaa
gagcttaaagaaagacgacagctcctacaagagcatttccaacctgtggaatcggagttt
gcgtttgccaagtcatcagatggaagcacgacagaagagatccaggcattgctcgaagaa
agtgtgaaggatgggtgtgagggtttgatggtgaaaatgctcactagcgagtcatcaaca
tatgagcccagtagaagaagtatgaattggctcaagctcaagaaagactacctttcaggt
gttggagactctctcgatcttgttgtcgttggagcatatcatggcaaaggcaaacgtaca
gcagtctatggcgctttcctcctcgcgtgctatgatcccgattcggaacattatcagact
atctgcaagattggtaccggtttctccgaggaaatcctcacacaattctacgagttactt
aaacctttagaactggaagtcgtgagaggagatatagaggttggaggagccaaaccggat
gtatggtttgagcccagagtggtctgggaggtcttaacagccgatttgagtttaagtccg
atttacgcggcggcacatggtgtaatcgattctcgaggaatctcgctccgtttccctcgg
tttatcaggattagagacgacaagtctgctgacgaagccacaacggctgagcaggtcagc
gagttctatcaacgtcagatttcggcaggtggcaagaaaggggcgggggcggacgtggat
gacttctggtaa

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