KEGG   Cryptococcus neoformans var. neoformans JEC21: CNK00930Help
Entry
CNK00930          CDS       T00243                                 

Definition
(RefSeq) DNA ligase (ATP), putative
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
cne  Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CNK00930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cne03400]
    CNK00930
Enzymes [BR:cne01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CNK00930
DNA repair and recombination proteins [BR:cne03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     CNK00930
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 BRCT DNA_ligase_A_C RNA_ligase LIG3_BRCT PTCB-BRCT RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID: 3254392
NCBI-ProteinID: XP_024513713
LinkDB All DBs
Position
11:complement(join(290985..291001,291054..291130,291182..291319,291369..291463,291519..291569,291622..291732,291787..292177,292236..292338,292397..292525,292579..292663,292720..292753,292806..292863,292913..292925,292981..293099,293154..293197,293253..293277,293325..293413,293476..293535,293596..293717,293771..293876,293937..294135,294190..294225,294275..294360,294416..294494,294548..294752,294801..294937,294991..295076,295135..295271,295327..295458,295518..295793))
Genome map
AA seq 1079 aa AA seqDB search
MAVHAPYNHAPPPTQEINGQKPTLAPAITLERPADCINRGQYPAFYIICGYLNRLRADAP
HKKYELLTRIFGNWREKVGPDLYPLIRLLLPDKDRERPVYNLKESMLARCYIDILSLEKH
SEAAQRLIKWKQPAGNSPNPTGDFAKVCYNEIKARSTVEEGQLSVEAVNMLLDKLAVGKM
KQKDYVPILKAINMQCTAEEQEWIIRIILKDLHISIRERGVLSAFHPDAIDLYNVCSDLK
RVCWTLYDPGFRLNKNETHLELFHSFLPQLCGRMNDASLENIAKAIGAPKEFIMEEKLDG
ERIQLHMRGNGAQWFYCSRKAKDYTYLYGAHPGEGSLTRYIATAFQDNVRNVILDGEMMV
WDPVVERYLAFGTLKSAALDHFNDETAPRPCFKVFDILFLNDHCLSRKRLSERKRLLRSG
KIFKNIENYKGRLEFVDEKRGKNAKDIREYLERVVETKGEGLVVKKTDVIYQTNSRGYDW
IKVKPEYSDQMGENLEVLVLGGWWGKGGRSGKISRLLCGLREQAFDDGTVERPSFKTFCS
IGSGMSYSDYEWILNKHKKHWRPFDRSNPPPFMKLGPVGLDDKPDVYIEPENSFVIEVKA
SEIVPAGGYGIGFTLRFPRCKYIYYDKNSRDYALDDESKERDMWTSMSVDDFMDLFSRPK
RSYDDSQGPGKRKKRKVIRSKKNHLISNFRGQKLSDADVETSIFSDMTFFIVKGTSDYPK
ADLEALVHKHGADFTQAQLSDLSAIVISPDQKNPLVRAQIRHGVNVIKPEWVFESIARRT
ALPFLKEFLVFASEEAQDGRYYNKTLEQYDKVSFVRDRTGGALVDEDGDADVEDEIMDGE
DKDEIDVEESRESKNRRMAREDLKEKESNRTLEQKKLQEAWGLRSRASPGDSDSEPEEEM
SLKEESDTDSERSRGLRAIYEDEEDGENDSHESDVGVNGDDYRAVPLSGLNDKEEGLMGE
SPEAMHYDEDRIFYHLAFYIDTAKNAAVNGLESSSPSFDTQERLVKVEKLLIENGGRVAR
SISDPKLTHIIMDDEDSRRYVELTRKTAMPKRKHIVTPKWVEDCVDEETLLDEDLYKPK
NT seq 3240 nt NT seq  +upstreamnt  +downstreamnt
atggcagtacacgctccatacaatcatgcacctccgcccactcaagaaataaatggtcag
aaaccgacattagcccccgcgataactctcgaacgtccagcggactgtatcaaccgcggc
cagtatcccgctttctacattatctgcggctatcttaacagactacgggcagatgcgccg
cacaaaaagtacgagcttctgacgaggatattcgggaactggagggagaaagtagggcca
gatctttatccgttgatcaggttgttgttacctgataaagatagggaaagacccgtgtat
aatttgaaagagtcaatgttggctcgatgctacattgatatattgtcgttagagaagcac
agcgaggcggctcagaggttgatcaaatggaagcagccggcaggaaattcaccaaatcca
actggagactttgcgaaagtctgttacaatgagataaaagctcgatccaccgtggaggaa
gggcaattgagtgttgaagcagtaaacatgctcctagataagctggctgttggaaaaatg
aagcaaaaagattacgtgccgatactcaaggcaatcaatatgcaatgtacagctgaggaa
caagaatggattatccggattatactcaaagacctgcatatctcaatacgtgaacgaggg
gtcttatcagcgtttcatccggatgcgatagatctgtataatgtttgttcagacctgaag
cgtgtctgttggactttgtatgatcccggcttcaggctcaataaaaatgaaacgcatctt
gaattattccactcctttctccctcaattatgtggccgcatgaatgatgcgtcgctcgaa
aatattgcgaaggctataggagcgccaaaagagttcatcatggaagaaaagttggacggg
gagagaatacagttacacatgagaggaaatggtgcacaatggttctactgttcaaggaaa
gctaaagactatacgtatctatatggcgcccacccaggagagggaagcttgacgcgctac
atagctactgcgttccaggacaatgtcagaaatgtcattcttgacggagagatgatggtt
tgggatcctgtagtggaacgttacctggcttttgggaccctcaagtcagctgcacttgac
catttcaatgatgaaaccgcccctcgtccatgtttcaaggtgtttgacatccttttcttg
aacgatcattgcctttcccgcaaacgtttatcagaacgcaagcgtctccttcgctctgga
aaaatcttcaagaatattgagaactataaggggagattggaatttgtagacgagaaaaga
gggaagaacgcaaaggatattagagagtatttggaaagagtggtcgagaccaaaggcgaa
ggtttagtggttaagaagacggatgtgatttatcagacgaactcgagaggatatgactgg
atcaaggtcaagcccgagtatagtgaccaaatgggtgagaatttagaagtcttggtgttg
ggcggatggtggggtaaaggaggacgttcagggaagatttcaagattactctgcgggtta
agagaacaggcgtttgacgatggtacagtggaaagaccaagcttcaagactttctgttca
atcggttctggaatgagctactcggactacgagtggattttgaataaacacaagaagcat
tggagaccttttgataggtccaacccaccccctttcatgaagcttgggccagtgggtctc
gatgacaagccggatgtttatatcgagccggaaaactctttcgtcatcgaagtaaaggcg
tctgaaatcgtgccggcaggaggctatggaataggatttactcttcgttttccacgctgt
aaatacatttactacgacaagaatagtcgagactatgcgctcgatgatgagtcgaaagag
agggatatgtggactagtatgtctgtggacgacttcatggacctcttctcaaggcccaag
aggtcgtatgacgatagtcaaggtcctgggaaaaggaagaagcgcaaggtgatcaggtct
aaaaaaaaccacctcatcagcaacttccgaggtcagaagctttcagatgcagatgtggaa
acgagcatattcagcgatatgacgttttttattgtgaagggcacatccgactaccctaaa
gctgatctcgaagcacttgtgcataagcatggtgcagatttcacgcaagcgcagctgtcc
gacctatcggcgattgttatctctcccgatcaaaagaaccctttagtacgagcccagatc
agacacggagtcaatgtcatcaaacctgagtgggtatttgagagtattgcgcggaggaca
gcattgcctttcttaaaggaattcctggtcttcgcatcggaagaagctcaagatgggcga
tattacaataagacacttgagcaatacgataaggtttcttttgtgcgcgatcgtaccggc
ggggcactcgtcgatgaagatggtgatgccgatgtcgaagatgagatcatggatggtgag
gacaaagatgagattgacgtggaagaaagtcgagaatccaagaaccgaaggatggccaga
gaagatctcaaagagaaagaatcgaatagaacgctggagcagaagaagcttcaggaagca
tggggtttgagatcacgagcgagtccaggagattccgatagtgaacctgaagaggagatg
tcgctgaaggaggagagtgacacggattcggaaagaagtagggggctccgggcgatttat
gaagatgaagaggacggagaaaacgacagtcatgaatcagatgttggggtaaacggagat
gattacagagcggttcccctcagcgggttgaatgacaaggaggaaggacttatgggagag
agtccagaagcaatgcactatgatgaagatcgaattttctatcaccttgcattttacatc
gatactgcaaagaacgctgcggttaacggcttggaaagctcgtctccctctttcgacacc
caagaaagactcgtcaaagtcgagaagctgctgatagagaatggtggacgtgtggcgaga
agcatctccgatcccaagctcacgcacattataatggatgatgaggattcgagaagatac
gtcgagttgacgaggaagactgccatgcccaaaaggaaacacattgtgacccccaaatgg
gtggaggattgcgtggatgaagagacattgctggacgaagatctgtacaagcccaagtaa

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