Corynebacterium pseudotuberculosis 258: CP258_03710
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Entry
CP258_03710 CDS
T02118
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
coe
Corynebacterium pseudotuberculosis 258
Pathway
coe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
coe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CP258_03710 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
coe03400
]
CP258_03710 (mfd)
Enzymes [BR:
coe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CP258_03710 (mfd)
DNA repair and recombination proteins [BR:
coe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CP258_03710 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
UB2H
DUF3638
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AFK16352
LinkDB
All DBs
Position
775762..779556
Genome browser
AA seq
1264 aa
AA seq
DB search
MSTDSAVTNRHHPAMLAGLLKVAATDPKIKGLLEHVGDSALHITGIDQSRPWAIGALSHR
APVLVITATGREAEDLTAELRAMLGDSVAWFPAWETLPHERLSPAADVAGQRAKILSHLN
ELRVVVTAARGVSQPILQEAEGRNALLLETEKDYDLEDLTRQLVFRAYQHVDLVAKRGEF
ATRGGILDIFPTTMDRPVRLEFWGDEITEIREFSVADQRAIPDSSHASVEIFPARELLVT
PGIAERAGDLALKYQGNPTLQELLSKLADGAPADGMEALIPALVDTPLVTLPELMPQGTH
VIAVGPEKIRTRVADLQATDAEFLAAGWEAAAMGASGPIAAQGLDLEASSYRSYESLEIS
ARQAGCSWWTFAPTGMFEADAADTLPLDFEAGPTPRGDLSQIEEMMSLLLAHTSAGGRAA
FIAPAKGAIKRMVDRFKEKGIPTKVATPGWEPTPGEVTLYQALSHAGLVFPKVRKKAGSE
ALPLVVVTETDLTGNRVGDIAGAKRRPAKRRNRVDPLALKTGDFVVHETHGIGRFLKMTE
RTITSGDETSRREYIVLEYAPAKRGQPADQLFVPMDSLDLLSKYVGGEKPALSKMGGSDW
KNTKKKARAAVREIAGELVELYAKRQSAPGHPFAPDSPWQYEMEDNFPYVETEDQMMAIE
AVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVVLVPTTLLAQQHLSTFD
ERMAGFPVNLRGLSRFTSTVEAKETIKGLADGTVDIVIGTHRLLQTGIQWKNLGLVIVDE
EQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYV
GAQEDKQIAAAIRRELLRDGQVFFVHNKVSDIEKKARDLRELVPEARIVVAHGQMSEELL
EQTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERG
YAYFLYPKGQTLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGV
GFDLYVRLVGEAVEAYRALADGKIVDATDDGPKEIRIDLPVDAHIPESYINAERLRLEVY
RKLAASQSNADLILAVEEMEDRYGPLPEEVKRLLAVARLRHLAKSAGISDIGVQGTRIKI
HPVELPDSKQVRLKRLLPSATYRAAAKAIQLSFPKEGRNVTDKPLRDVALLQWVADFLSE
MFELPRISVTGEAVSEKIISVGEPQVSYGRTRATQRDVTKRVERNDDEDYEDKREARRRK
FRMR
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaactgatagcgcagtcactaaccgccatcatcccgccatgcttgcggggctactc
aaagtcgcggcgaccgaccccaagatcaaaggcctactggaacacgttggtgattcagcc
ctacacattacggggattgatcaatctcgcccatgggctatcggggcattatcgcaccga
gctccagtactggtgatcacggctacagggcgtgaagcagaggacctcactgcagaactt
cgggcaatgctcggcgactccgtagcctggtttccggcatgggagacacttccccacgag
aggcttagcccagccgcggatgttgcggggcaacgagctaagattttgtcgcatctgaat
gaactacgcgtggtggtaactgctgcacgcggtgtcagccagccgattcttcaggaagca
gaggggcgcaatgcgctcctcctagagactgaaaaagattatgatttagaagatctgacc
cggcaacttgtattccgggcttatcagcacgttgacctcgtggctaagcgcggagaattt
gctactagaggcggaatcctcgacatatttcccacgactatggatcgacccgtgcgctta
gaattctggggagacgagatcacagagatccgagagttctcagtggctgaccagcgagca
atcccggattcttcccacgcgtctgtagaaatatttccggctcgtgaactccttgtcaca
cccggcatagcggaacgcgccggtgatttagctctgaaatatcagggaaaccccacgctg
caagaactcttatctaaattggcagatggtgcccccgccgatggcatggaagcgctcatc
ccagcgctcgtggataccccgttagtcactctgcctgagcttatgccccaggggacgcat
gtgatagcagtcggaccggagaagattcgcactagagtcgcggatttacaagctaccgat
gcagagttccttgcggcgggatgggaggctgcggctatgggggcctcggggccgattgcg
gctcaaggattagatctagaggctagttcttatcgttcttatgagtccttagaaatatct
gcgcgccaggcgggttgctcatggtggacgtttgctcccactggcatgtttgaagcagac
gcggcagatacccttccccttgactttgaagcaggacccaccccgcgtggtgatctctcc
cagattgaagagatgatgtccctgcttctagcgcatacctctgcaggtggcagagcggcc
tttatcgctcccgccaagggtgcaatcaagcgcatggtggacagattcaaagaaaaagga
atacccacaaaagtagccacacccggttgggagcctactccgggcgaagtgactctgtat
caagcactcagccacgcaggtcttgtatttcctaaagtccgtaaaaaagcaggaagtgag
gcattgccccttgtcgtggtcacggagaccgatctcacgggtaatcgagtgggggacatc
gcaggggcaaaacgtcgtccagctaaacgacgcaaccgtgtagacccacttgcgctaaaa
accggtgattttgtggttcacgagacccatggcattggacgattccttaagatgaccgag
cgaacgatcacatccggggatgaaacctcgcggcgtgaatacatcgtcttggaatatgca
ccggctaaacggggacaacccgcggaccaactctttgttcccatggactcccttgaccta
ctgagtaagtatgtgggaggtgaaaagcccgcgctgtccaagatgggcggctccgattgg
aagaatactaagaaaaaagctcgtgctgcggttcgggaaattgccggtgagctcgtcgag
ctttatgccaagcggcaatccgcgccgggacatccttttgcgcctgattctccctggcag
tatgagatggaagataacttcccatacgttgagaccgaagatcagatgatggctattgag
gctgtcaaagcagatatggaaaagcctgttcctatggatcgcgtgattgtaggcgacgtg
ggatacggtaagacagaagtcgctgtacgagctgcatttaaggctgttcaggatggaaaa
caagtggtggtcttggtgcccactacgttattagcgcagcagcatttgtccacattcgat
gaacgcatggctggcttccccgtgaatctgcgaggcttaagccgttttacctccacggtt
gaggcaaaggaaacgataaaagggcttgccgacggcaccgtagacattgtaatcggtaca
caccgcctgcttcagacaggaattcagtggaagaatcttgggttggtcatcgtcgatgag
gagcaacgttttggtgttgagcacaaagaacacatcaaagcgttgagaacacatgttgac
gtgttgacgatgtcggctacaccgatccctagaaccttggaaatgtcaatggctgggatc
cgggagatgtctactattttgacgcctccggaggatcgtcatcccatcctgacttatgtt
ggagcacaagaagataaacaaatcgccgcagctattcggcgcgagctgttgcgagacggc
caagtcttttttgtacataacaaagtctccgatattgaaaagaaggctagggacctacgg
gaactggtaccggaagctcgtatcgtggttgcgcatggacagatgagcgaggagcttttg
gaacaaactgttcagggcttctgggatcgcgaatttgatgtgctggtatgtaccaccatc
gtggaaaccggtttggacattgcgaatgccaacaccctcatcgtggaaaatgcgcatcat
atgggtctttctcaactgcatcagctgagggggcgcgtaggacgctcgcgggaacgcggc
tatgcctatttcctgtatcccaaggggcaaacgctgacggaaaattcttatgaccgcctg
gccactattgcgcagaacaacgatttaggcgctggtatggcagtggctatgaaagacctg
gaaatgcgtggcgccggtaacgtgctcggcgcacagcaatcgggccatatcgcaggagta
gggtttgacctttatgtgagacttgtcggcgaagccgtggaagcctaccgggctctcgca
gacggaaagatcgtcgatgccaccgatgacggaccaaaagaaatccgcatcgacttgcct
gtggacgcgcatatcccagagtcatacatcaacgctgaaaggcttcgacttgaggtatat
cggaagctggcggcgtcgcaaagcaatgcggatctgatactcgcagtggaggagatggag
gatcggtatggtccgctgcctgaagaagtcaaacgtctgctggcggtggctaggctacgg
catctggccaagtcagcgggtatcagtgatattggagtgcaaggaacacggatcaagatt
catccggtggaactccctgactctaagcaagttcggttgaagcggctgttgccttctgcg
acatatcgtgctgcggctaaagctatccagttgtcctttcctaaagagggacgcaacgtt
actgataagccgcttcgcgacgtcgccctactccaatgggtagcagattttctgtcggaa
atgtttgaattgccgcgcatatcagttacgggggaagcagtctccgagaaaatcatctcc
gtgggggaaccccaagtttcttacgggcggactcgtgctactcagcgtgacgttacaaag
cgggtcgagcgcaacgatgatgaggactatgaggataagcgcgaagcgcgtaggaggaaa
ttccggatgcgttga
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