Colwellia sp. Arc7-D: DBO93_07280
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Entry
DBO93_07280 CDS
T05422
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cola
Colwellia sp. Arc7-D
Pathway
cola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DBO93_07280 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cola03019
]
DBO93_07280 (pnp)
03016 Transfer RNA biogenesis [BR:
cola03016
]
DBO93_07280 (pnp)
Enzymes [BR:
cola01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DBO93_07280 (pnp)
Messenger RNA biogenesis [BR:
cola03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DBO93_07280 (pnp)
Transfer RNA biogenesis [BR:
cola03016
]
Prokaryotic type
tRNA degradation factors
DBO93_07280 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
aRib
KH_2
S1_2
SLS1_KH2
Motif
Other DBs
NCBI-ProteinID:
AWB57373
UniProt:
A0A2S0UZK6
LinkDB
All DBs
Position
1685882..1688005
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AA seq
707 aa
AA seq
DB search
MFNPVTKTFEFGQHTVTLETGVIARQATCAVMASMDDTSVLVSVVGKKEAKPGQDFFPLT
VNYQERTYAAGKIPGGFFKREGRPSEEETLICRLIDRPIRPLFPEGFTNEVQVVITVVSA
NPEIAPDIIALLGTSAALAISGMPFSGPVGAARVGYTDGKYILNPLQSELVNSQLDLVVS
GTDSAVLMVESEADVLSEEVMLGAVMFGHEQMQTAITAIKEMAAEVNNPKWDWVAPVKNA
ELIAKIAELSEAQVNEAYQITEKAVRYEKIKEIRDGVVASLLADNAELDVQEAKDLFHGL
EKTVVRGRITQGSPRIDGRDPEMIRALDVMTGVLPRTHGSAVFTRGETQALVVATLGTQR
DAQRLDTIMGEKTDNFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGMLAVMPSAEE
FPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGTTGGITALQMDIKIEGITQEIMQLALNQAKAARTHILSVMDEA
IGGHRNDISEFAPRIHTMKVPQDKIRDIIGKGGATIRQLTEETGTTIEIEDDGTVRIAAT
DGDQAKDAIARITALTAEIEVGTVYTGKVVRIVDFGAFVNVLPGKDGLVHISQISEERVN
AVSDVLTEGQDVVVKVLEVDRQGRVRLSMKEAMEKPVAAAPETDSAE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatccagttactaaaacatttgagttcggtcaacataccgtaactctagaaacg
ggcgtaattgctcgtcaagccacttgtgccgttatggctagcatggacgatacatcagta
ttagtctctgttgttggtaaaaaagaagcaaaaccaggtcaagattttttcccattaaca
gttaactaccaagagcgtacttacgctgctggtaaaataccaggtggtttctttaaacgt
gaaggtcgtccttctgaagaagaaacactaatctgtcgtttaattgaccgtccaattcgt
ccgttattccctgaagggtttactaacgaagttcaagttgttatcactgttgtttctgct
aacccagaaatcgcccctgacattatcgctttattaggtacttctgcagcattagctatt
tcaggtatgccttttagtggtcctgttggtgcagcgcgcgttggttatactgacggcaaa
tatattcttaacccattacagtctgaattagtaaactcgcaattagacctagttgtttca
ggtactgactcagctgtattaatggttgaatcagaagctgacgtactttctgaagaagtt
atgcttggcgctgttatgtttggtcatgagcaaatgcaaacagctatcacagcaattaaa
gaaatggctgctgaagttaacaatcctaaatgggattgggttgcaccagtgaagaacgct
gaacttatcgctaagattgctgagctttctgaagcacaagttaacgaagcttaccaaatt
actgaaaaagcagtacgttacgaaaaaattaaagaaattcgtgatggtgttgttgcatct
ttattggctgataatgctgaacttgacgttcaagaagcaaaagatttattccacggttta
gagaaaactgttgttcgtggccgtatcactcaaggttctcctcgtattgatggtcgtgac
ccagaaatgatccgcgcattagacgtaatgacaggcgtattaccacgtactcatggttca
gctgtatttacacgtggtgaaactcaagcattagttgttgctactttaggtacacaacgt
gatgcacagcgtttagacactatcatgggtgagaaaacagacaacttcatgttgcactac
aacttccctccatactgtgttggcgaaacaggttttgttggttctcctaaacgtcgtgaa
attggccatggtcgtcttgcaaaacgtggtatgttggctgttatgccttcagctgaagaa
ttcccatactcagttcgcgtagtttctgaaattactgaatcaaatggttcatcttcaatg
gcttctgtatgtggtacttcattagcacttatggatgctggtgtaccaattaaagcatct
gtagcgggtattgctatgggtctagttaaagaaggcgacaactttgttgttctttcagat
atcttaggtgatgaagatcacttaggcgatatggactttaaagttgcgggtactactggt
ggtattactgcacttcaaatggacattaaaattgaaggtattacacaagagatcatgcaa
cttgctttaaaccaagctaaagctgcacgtactcatatcttaagtgttatggatgaagct
attggtggacatcgtaacgatatctctgaatttgctccacgcattcacacgatgaaagta
ccacaagataagatccgtgacattattggtaaaggtggcgcaactattcgtcaattaacc
gaagaaactggcactacaattgaaattgaagatgacggtacggttagaatcgcagcaaca
gatggcgatcaagcgaaagatgcaattgcacgtattactgcattaacagcagaaattgaa
gtaggtactgtttacactggtaaagtagtacgtatcgttgatttcggtgcttttgttaac
gtattaccaggcaaagatggtttagtacatatatctcaaatttctgaagaacgtgttaac
gcggtaagcgacgttttaacagaaggtcaagatgtcgttgttaaagtactagaagttgat
cgtcaaggtcgcgtacgtttaagcatgaaagaagcgatggaaaagccagtagcagcagcg
cctgaaactgactcagcagagtaa
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