Candida orthopsilosis: CORT_0B09820
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Entry
CORT_0B09820 CDS
T02488
Name
(RefSeq) poly(A)-binding protein
KO
K13126
polyadenylate-binding protein
Organism
cot
Candida orthopsilosis
Pathway
cot03015
mRNA surveillance pathway
cot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CORT_0B09820
09123 Folding, sorting and degradation
03018 RNA degradation
CORT_0B09820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cot03019
]
CORT_0B09820
03041 Spliceosome [BR:
cot03041
]
CORT_0B09820
Messenger RNA biogenesis [BR:
cot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
CORT_0B09820
mRNA cycle factors
Stress granule specific factors
CORT_0B09820
Spliceosome [BR:
cot03041
]
Complex C
Other components
Complex C specific factors
CORT_0B09820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_occluded
YflT
FAM192A_Fyv6_N
Motif
Other DBs
NCBI-GeneID:
14539128
NCBI-ProteinID:
XP_003868121
UniProt:
H8X0H4
LinkDB
All DBs
Position
2:complement(2048002..2049918)
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AA seq
638 aa
AA seq
DB search
MSAAETNQLQESLEKLNIDSSSTAPAETKPAVESDAPAGAAPAEPSSEEQGELGGVAENS
ASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAID
ELNYSLIENRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKV
ATDDLGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEMKAN
YTNIYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVEAVE
ALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFVKNLDDQIDSEK
LEEEFKPFGTITSAKVMVDDAGKSRGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALA
QRKDVRRSQLEQQIQARNQMRMQNAAAAAGFPGQFMPPMYYGQQGFFPPGGRGNAPFPGP
NPQMMMRRGQPGQPFPEQWPRPGGPNGQPVPVYGIPPQFPDQRAQQQQQQQQQRGYYPGQ
AGVKVPAKDLAAIISSVPPEQQKRILGEELYPRIVATGKAQEPEAAGKITGMMLGLENQE
ILDLLDDDELFNNHFEDALTAYEEYKKSEAGVAANEEA
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctgctgagactaatcaactccaagagtctttggagaaattgaatatcgactca
tcctccactgctcctgctgaaaccaaaccagcagtcgagtccgatgctccagctggtgct
gctcctgctgaaccttcttctgaagaacaaggtgaattaggtggtgttgccgaaaactca
gcctcgttgtacgttggagaattaaacccatcagtcaatgaagcaacccttttcgaaatt
ttttctcctattggtcaagtttcatcaattagagtttgtcgtgatgctgtttcgaagaaa
tctttgggttatgcttatgtcaactaccacaaattcgaagatggtgagaaagccattgat
gaattgaactacagtctcattgaaaatagaccatgtcgtatcatgtggtctcaaagagat
ccatcggcaagaagatccggagatggaaacatctttatcaaaaacttgcatccagctatt
gacaacaaggccttgcacgataccttttcagcattcggtagaattttgtcatgtaaagtt
gctactgatgatttggggcaatctaaatgctttggttttgttcattacgagactgcggaa
gctgctgaagctgccattgaaaacgttaacggtatgttattgaatgaccgtgaggtatat
gttggtaaacacgtgtcaaagaaggaccgtgaatctaaattcgaagagatgaaagcaaac
tacacaaacatctatgtgaagaacattgacttggaattctctgaaaaagaatttgaagac
ttatttgctccatatggtaagattacttccatttatttggaaaaggatcaagatggaaaa
tccaaaggttttggtttcgtcaactacgaggagcacaaatctgccgttgaagctgttgaa
gctttgaacgacaaggaaattaatggtcagaagatctacgttggtagagctcagaagaag
agagaaagaactgaagagttgaagaaacaatacgaagctattagattggagaagttgtcc
aaataccaaggggttaacttatttgtcaagaacttggatgatcaaatcgattccgaaaag
ttagaagaagaatttaaaccatttggaaccattacttctgctaaagtcatggttgatgat
gctggtaaatctagaggatttggctttgtttgtttcagtactccagaagaagctactaaa
gctatcactgaaatgaaccaaagaatggtcaatggaaagccattgtacgttgctttggct
caacgtaaggatgttagacgttctcaattggaacaacaaatccaagcaagaaatcaaatg
agaatgcaaaacgctgctgctgctgctggattcccaggtcaatttatgcctccaatgtac
tatggtcaacaaggtttcttcccaccaggtggtagaggaaatgctccattcccaggacca
aacccacaaatgatgatgagaagaggtcagccaggtcaaccattcccagaacaatggcca
agaccaggaggacctaacggtcaaccagtcccagtttacggtattccaccacaatttcca
gaccaaagagctcaacaacagcaacaacagcaacaacaaagaggttattatccaggacaa
gccggtgttaaagttccagctaaggatttagctgctatcatttctagtgttccaccagaa
cagcaaaagagaattttgggagaagaattatacccaagaattgttgccactggaaaggcc
caagaacctgaagctgcgggtaagattactggtatgatgttgggattagaaaatcaagaa
attttggatttgttggatgatgatgaattattcaacaaccactttgaagatgctttaact
gcatatgaagagtacaaaaagtctgaagctggagttgctgctaatgaagaagcttaa
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