Colwellia sp. Arc7-635: EKO29_03375
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Entry
EKO29_03375 CDS
T06022
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
cov
Colwellia sp. Arc7-635
Brite
KEGG Orthology (KO) [BR:
cov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cov03016
]
EKO29_03375 (thpR)
Enzymes [BR:
cov01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
EKO29_03375 (thpR)
Transfer RNA biogenesis [BR:
cov03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
EKO29_03375 (thpR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AZQ83180
UniProt:
A0A3Q9G704
LinkDB
All DBs
Position
complement(760599..761288)
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AA seq
229 aa
AA seq
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MPRAHFSSLKAGTMLKKRMFIALDISSADKVNIAQWREQHLDLQFKAVAAENFHITLAFL
AFIDPQQQANIEQSINQQHTTIQQRFKALAQQKDALLDLPNTAPNAVPIVLSKIAYFKTA
KVLHLTPTNCPDWLLDLNDTISQLCCRCNIPLQDRIYQPHLSLYRKAKLPELVNLAALQK
NVIAQTVNITSFSLYHSYSTPSGVHYEAIKTCKLSSTTKKRNSSNGKYH
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
atgccacgcgctcatttttcatcgctaaaggctggaaccatgcttaaaaaaagaatgttt
atcgccttagatatatcaagcgccgataaagtaaatattgcgcaatggcgcgaacagcac
ttagatctacaatttaaagccgttgccgcagaaaactttcatattactttagctttttta
gcctttatcgacccacaacagcaagccaatatcgaacaatctattaaccaacagcacacg
actattcagcagcgattcaaagcattggcgcaacaaaaagatgccttactcgacttacct
aatactgcgccaaatgctgtaccgatagtattatcaaaaatagcttacttcaaaacagcg
aaagtactacacctgacgccaacaaattgccctgactggctactcgacttaaatgacacc
attagccagttatgttgtcgctgtaatattcccttgcaagatagaatttatcagccgcac
ctaagcctttaccgtaaagctaaattaccagaacttgtaaacttagcagcactacaaaaa
aacgtaatagctcaaacggtaaatatcactagctttagtttatatcactcttactcgaca
ccctccggcgtacactacgaagccatcaaaacttgtaaacttagcagcactacaaaaaaa
cgtaatagctcaaacggtaaatatcactag
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