KEGG   Colwellia sp. Arc7-635: EKO29_04255
Entry
EKO29_04255       CDS       T06022                                 
Name
(GenBank) RecQ family ATP-dependent DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
cov  Colwellia sp. Arc7-635
Pathway
cov03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cov00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EKO29_04255
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cov03019]
    EKO29_04255
   03400 DNA repair and recombination proteins [BR:cov03400]
    EKO29_04255
Enzymes [BR:cov01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     EKO29_04255
Messenger RNA biogenesis [BR:cov03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     EKO29_04255
DNA repair and recombination proteins [BR:cov03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      EKO29_04255
SSDB
Motif
Pfam: Helicase_C DEAD RecQ_Zn_bind Thioredoxin_8 TniB MGS IF2_N zf-CXXC
Other DBs
NCBI-ProteinID: AZQ83334
UniProt: A0A3Q9GA38
LinkDB
Position
971738..973690
AA seq 650 aa
MSTLQQSLKTTFGFDEFRIGQEQTITQLLNGDSSLAIFPTGAGKSLCYQLAAINLPHLTL
VVSPLLALMKDQLAFLHAKGIPAASIDSTLSFEQSQQINRDVRSGEIKILMVSVERFKNE
RFRQFIESIAISMLVVDEAHCISEWGHNFRPDYLKLPRYRQELNIPLVLLLTATATKQVK
QDMANKFAIAQEHVVQTGFYRSNLDLTVLPVAEDAKNKTLLDLIHRHEGCGIVYVTLQHS
AEKVADYLQQQGIAAKAYHAGFKDDVRQQIQQDFMLGKTPIIVATIAFGMGIDKADIRFV
IHYDLPKSIENYSQEIGRAGRDKGDAACFTLANLDGIHTVENFVYADTPERTSIDYVLQN
IRHELQNGQWELQVLSLSNASNIKQLPLKTLLVQLELLGVINAKFSYFADFKFKFITPKE
TIINSFNAERGEFLTQIFDCAKMKKIWGEPNFEQMHARYNAPRKRIVSALEYLAEQQHIV
LETKKATEVFSVNIDALENDALVDTLFHYFLEKEQAEIVRITKLVEFFQSESCLTRQLSH
YFDDQCAPTNCGHCSVCRKQVATLQYSRNYQAVSSETITLAISQLREHFSSLKGSVNVQP
NDISVDTLCRFLSGMSVPLFTRAKVRKLNYFGVCQYMRYAEIKEQVIPLL
NT seq 1953 nt   +upstreamnt  +downstreamnt
atgtcgacgttacagcaatcattgaaaactacctttggttttgatgaatttagaataggg
caagagcaaacgattactcagttacttaatggtgactcttcattagctatattccctact
ggtgcaggtaaatcgctgtgttatcaattagcggcgattaatttaccccatttaacttta
gtggtatcgcctttgttggctttaatgaaagatcagttggcattcttacatgcgaaaggt
atccctgccgctagcattgactcaacattgtcatttgagcaaagtcagcaaattaaccga
gatgttcgctcgggggaaattaagattttgatggtgtcagttgagcgtttcaaaaacgaa
cgttttcgtcaatttattgaatcaatagccatttccatgttggttgtagacgaagcgcat
tgtatttctgagtggggccacaattttagacctgattatctcaagctaccgcgttatcgc
caagagcttaatattccgcttgtattgttacttaccgcgacagccactaagcaagtgaag
caagacatggccaataaatttgccatagcgcaagagcatgttgtccaaaccggtttttat
cgaagtaatttagatttaacggttttacctgttgctgaagatgcaaaaaataagacgttg
cttgatttaatccaccggcatgaaggttgtggtattgtttacgtaactttgcaacatagt
gctgaaaaagtggctgattacctacaacaacaaggtattgctgcaaaggcttatcatgcc
ggctttaaagatgatgttcgccagcaaattcaacaagactttatgctagggaaaacccct
attatcgtggcaactattgcctttggtatgggaatagataaagcagatattcgttttgtt
attcattatgacctaccaaaatctattgaaaattatagccaagaaattggccgagcgggt
cgagataaaggcgatgctgcttgttttaccttagctaaccttgatggtattcatacagta
gaaaactttgtttatgctgatacacctgaacgtacaagtattgactatgtattacagaac
attcgccatgagctgcaaaatggtcaatgggaacttcaagtgctgtcactatcaaatgcg
agtaacatcaaacaattgcccttaaaaacactacttgtgcaattagagcttcttggtgtc
ataaatgccaagtttagttactttgctgactttaagtttaaatttattaccccaaaagaa
acgattattaatagctttaatgcagaacgaggcgagtttttaactcaaatatttgattgc
gctaaaatgaaaaaaatttggggtgagccaaactttgaacaaatgcatgcccgttataat
gccccgaggaaaagaattgtttcagcgttagagtacttagctgaacaacagcatattgtt
ttagaaacgaaaaaagccacagaggtttttagtgtcaatatcgacgcgttagaaaatgat
gccttagtcgatacgttatttcactactttcttgagaaagaacaagctgaaatagtgcgt
atcactaagttagttgaatttttccaaagcgagagttgtttaactcgacaactctctcat
tattttgatgatcaatgtgcgcctacaaattgcggtcattgttcggtttgtaggaaacag
gtcgcaactttacaatactcaagaaattaccaagcagttagttcagaaactattacattg
gctatttcgcagttacgagaacacttttctagtctaaaaggctctgtgaacgtacaacca
aatgatatatctgtcgatacgctttgccgttttttatctggtatgagtgtgccactattt
actcgcgctaaagtgcgaaaattgaattattttggtgtctgtcaatatatgcgttatgca
gagattaaagagcaggtcattcccttgttgtaa

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