Colwellia sp. Arc7-635: EKO29_04255
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Entry
EKO29_04255 CDS
T06022
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cov
Colwellia sp. Arc7-635
Pathway
cov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKO29_04255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cov03019
]
EKO29_04255
03400 DNA repair and recombination proteins [BR:
cov03400
]
EKO29_04255
Enzymes [BR:
cov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EKO29_04255
Messenger RNA biogenesis [BR:
cov03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EKO29_04255
DNA repair and recombination proteins [BR:
cov03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EKO29_04255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
Thioredoxin_8
TniB
MGS
IF2_N
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AZQ83334
UniProt:
A0A3Q9GA38
LinkDB
All DBs
Position
971738..973690
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AA seq
650 aa
AA seq
DB search
MSTLQQSLKTTFGFDEFRIGQEQTITQLLNGDSSLAIFPTGAGKSLCYQLAAINLPHLTL
VVSPLLALMKDQLAFLHAKGIPAASIDSTLSFEQSQQINRDVRSGEIKILMVSVERFKNE
RFRQFIESIAISMLVVDEAHCISEWGHNFRPDYLKLPRYRQELNIPLVLLLTATATKQVK
QDMANKFAIAQEHVVQTGFYRSNLDLTVLPVAEDAKNKTLLDLIHRHEGCGIVYVTLQHS
AEKVADYLQQQGIAAKAYHAGFKDDVRQQIQQDFMLGKTPIIVATIAFGMGIDKADIRFV
IHYDLPKSIENYSQEIGRAGRDKGDAACFTLANLDGIHTVENFVYADTPERTSIDYVLQN
IRHELQNGQWELQVLSLSNASNIKQLPLKTLLVQLELLGVINAKFSYFADFKFKFITPKE
TIINSFNAERGEFLTQIFDCAKMKKIWGEPNFEQMHARYNAPRKRIVSALEYLAEQQHIV
LETKKATEVFSVNIDALENDALVDTLFHYFLEKEQAEIVRITKLVEFFQSESCLTRQLSH
YFDDQCAPTNCGHCSVCRKQVATLQYSRNYQAVSSETITLAISQLREHFSSLKGSVNVQP
NDISVDTLCRFLSGMSVPLFTRAKVRKLNYFGVCQYMRYAEIKEQVIPLL
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgttacagcaatcattgaaaactacctttggttttgatgaatttagaataggg
caagagcaaacgattactcagttacttaatggtgactcttcattagctatattccctact
ggtgcaggtaaatcgctgtgttatcaattagcggcgattaatttaccccatttaacttta
gtggtatcgcctttgttggctttaatgaaagatcagttggcattcttacatgcgaaaggt
atccctgccgctagcattgactcaacattgtcatttgagcaaagtcagcaaattaaccga
gatgttcgctcgggggaaattaagattttgatggtgtcagttgagcgtttcaaaaacgaa
cgttttcgtcaatttattgaatcaatagccatttccatgttggttgtagacgaagcgcat
tgtatttctgagtggggccacaattttagacctgattatctcaagctaccgcgttatcgc
caagagcttaatattccgcttgtattgttacttaccgcgacagccactaagcaagtgaag
caagacatggccaataaatttgccatagcgcaagagcatgttgtccaaaccggtttttat
cgaagtaatttagatttaacggttttacctgttgctgaagatgcaaaaaataagacgttg
cttgatttaatccaccggcatgaaggttgtggtattgtttacgtaactttgcaacatagt
gctgaaaaagtggctgattacctacaacaacaaggtattgctgcaaaggcttatcatgcc
ggctttaaagatgatgttcgccagcaaattcaacaagactttatgctagggaaaacccct
attatcgtggcaactattgcctttggtatgggaatagataaagcagatattcgttttgtt
attcattatgacctaccaaaatctattgaaaattatagccaagaaattggccgagcgggt
cgagataaaggcgatgctgcttgttttaccttagctaaccttgatggtattcatacagta
gaaaactttgtttatgctgatacacctgaacgtacaagtattgactatgtattacagaac
attcgccatgagctgcaaaatggtcaatgggaacttcaagtgctgtcactatcaaatgcg
agtaacatcaaacaattgcccttaaaaacactacttgtgcaattagagcttcttggtgtc
ataaatgccaagtttagttactttgctgactttaagtttaaatttattaccccaaaagaa
acgattattaatagctttaatgcagaacgaggcgagtttttaactcaaatatttgattgc
gctaaaatgaaaaaaatttggggtgagccaaactttgaacaaatgcatgcccgttataat
gccccgaggaaaagaattgtttcagcgttagagtacttagctgaacaacagcatattgtt
ttagaaacgaaaaaagccacagaggtttttagtgtcaatatcgacgcgttagaaaatgat
gccttagtcgatacgttatttcactactttcttgagaaagaacaagctgaaatagtgcgt
atcactaagttagttgaatttttccaaagcgagagttgtttaactcgacaactctctcat
tattttgatgatcaatgtgcgcctacaaattgcggtcattgttcggtttgtaggaaacag
gtcgcaactttacaatactcaagaaattaccaagcagttagttcagaaactattacattg
gctatttcgcagttacgagaacacttttctagtctaaaaggctctgtgaacgtacaacca
aatgatatatctgtcgatacgctttgccgttttttatctggtatgagtgtgccactattt
actcgcgctaaagtgcgaaaattgaattattttggtgtctgtcaatatatgcgttatgca
gagattaaagagcaggtcattcccttgttgtaa
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