Colwellia sp. PAMC 20917: A3Q34_06570
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Entry
A3Q34_06570 CDS
T04511
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
coz
Colwellia sp. PAMC 20917
Pathway
coz02020
Two-component system
coz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
coz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
A3Q34_06570
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A3Q34_06570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
coz03000
]
A3Q34_06570
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
coz02035
]
A3Q34_06570
Transcription factors [BR:
coz03000
]
Prokaryotic type
Helix-turn-helix
Other families
A3Q34_06570
Bacterial motility proteins [BR:
coz02035
]
Flagellar system
Flagellar assembly proteins
Others
A3Q34_06570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
Sigma54_activ_2
HTH_8
AAA_5
HTH_50
bpMoxR
AAA_2
AAA
AAA_16
AAA_7
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOW76550
UniProt:
A0A1D8RTX0
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All DBs
Position
complement(1538007..1539476)
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AA seq
489 aa
AA seq
DB search
MQGQKHVLVVDNDIARRDQIATVLSFVGEHFYVCPEDDIEQYFKDTDNILTVVLCGKVSD
LLVDFVKKHPETPFILHDVLDATLLSGAVNVLGSLAVPLNYAQLTEQVHHCHQYHNQLPS
KRNHNGPNLLFRSLVGASEPMLQVRFLIEQVACTQASVLVLGESGTGKEVVARNIHNLSD
RAKGPFVPVNCGAIPGELLESELFGHEKGAFTGAISTRKGRFEMAEGGTLFLDEIGDMPQ
PMQVKLLRVLQERTFERVGGAKSIKTNVRIIAATHQHLEDMITAGTFREDLFYRLNVFPI
ETPALRDRKEDIPLLIKELISRFEAEQGQGVRFTEQAIESLKLHAWAGNVRELSNLIERM
IIMFAEQVVNVSELPAKYRHIDVEEYQPEYPDELQERDAINELFSGFDYDDEEDTSSFDD
QPDEASVVDVLPNDGLNLKEYLADLEVSMINQALDKNDWVVARSAELLGMRRTTLVEKMR
KYNLQKNIN
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgcagggtcaaaaacatgtacttgtcgttgataacgacattgccagacgcgatcaaata
gcgaccgtattatcatttgtcggtgaacatttttatgtgtgtcctgaagatgatattgag
cagtattttaaagacactgataatattcttacggttgttttgtgtggcaaggtcagtgat
ttactggtcgattttgttaaaaaacaccctgaaacaccttttatcctccatgatgtactc
gacgcgactttattaagtggtgctgttaatgttttaggcagtttagctgtgcctttaaat
tatgctcagcttaccgagcaagtacatcactgtcatcaataccataaccaattaccctcc
aagcgaaatcacaacggtcctaatttgttattccgctctttggtgggcgccagtgaacct
atgttacaagtgcgctttttaattgaacaagtggcttgtacgcaagccagtgtcttggtt
ttaggtgagtcaggtacgggtaaagaagttgtagcacgtaatattcataatttatctgac
cgcgctaaggggccttttgttccagttaactgtggcgctatacccggtgaattattggaa
agtgaattatttggtcatgaaaaaggtgcctttacgggtgctatttctacccgtaaaggg
cgttttgaaatggctgagggtggcacattatttcttgatgaaataggtgatatgccgcaa
cccatgcaagtgaagctacttcgtgttctgcaagaacgtacttttgagcgtgtcggtggc
gctaagagtattaaaaccaatgtgcgtattattgctgcaacccatcagcacttagaagat
atgatcaccgcgggcacattccgcgaagatttattctatcgtcttaatgtttttcctatt
gaaacaccggcattacgtgatagaaaagaagatattccattactgattaaagaacttatt
tctcgttttgaagccgagcaaggacaaggtgttcgttttactgagcaagcgattgaatct
ttaaaattacatgcttgggcaggtaatgttcgagaattatctaacttaattgaacgtatg
atcattatgtttgctgagcaagtggttaatgtcagtgaattaccggcaaagtatcgtcat
attgatgttgaagagtatcaacctgaataccctgatgagttgcaagaacgtgatgcgata
aatgagctattttctggctttgattatgatgacgaagaagataccagcagttttgatgac
caaccagatgaagcatctgtggttgatgttttgccaaacgatggcttgaatttaaaagaa
tacttagcggaccttgaagtgtcgatgataaaccaagcacttgataaaaatgattgggtt
gttgcacgctcggcagaattattagggatgcgtcgaaccacattagttgaaaaaatgcgt
aagtataacttacaaaaaaacattaactaa
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