Colwellia sp. PAMC 20917: A3Q34_15170
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Entry
A3Q34_15170 CDS
T04511
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
coz
Colwellia sp. PAMC 20917
Pathway
coz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3Q34_15170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coz03019
]
A3Q34_15170
03009 Ribosome biogenesis [BR:
coz03009
]
A3Q34_15170
Messenger RNA biogenesis [BR:
coz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3Q34_15170
Ribosome biogenesis [BR:
coz03009
]
Prokaryotic type
rRNA helicases
A3Q34_15170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOW78065
UniProt:
A0A1D8RY89
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All DBs
Position
3545222..3547024
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AA seq
600 aa
AA seq
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MTTSNDAPVSFDSLGLPETLLSAVKSIGFENSTDIQAKTIPPLLAGKDVLGEAQTGTGKT
AAFGLPALAKIDVSLKKPQLMVLAPTRELAMQVAEAIESFGKNMKGLLVATLYGGQSYQP
QFQQLERGAQVVVGTPGRLMDHLRRKSLKLGNLSFCVLDEADEMLNMGFLEDIQWILDHL
PETTQMALFSATMPPAIRKIANRFLKDPEHIKIAAVKQSKANISQFAWKVSGIRKITALE
RIAEIVDYDAMIVFVRTRSDTVEVAEQLERAGYPALALNGDMNQAQRERCIEQMKSGKSS
ILVATDVVARGLDIPRISLVVNYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMHSL
RHYERLTSGVINTYELPNIEEIGKKRIERTRVEMAQIVADKDLVNMREIVEAMANESELS
MTDLAAALLFQKQLNQPLQPKEDPKPRRETRERSDRDSRSERGGRNESRGGRNERGGERG
AERGGERAPRKVKVNRTDVDWQTYRLEVGKEHGARPGDIVGAIANEISLDSSYIGAINLH
DKHTYVQLPKGMPEKSFEQLKRVKIRRQSLEITVSDVKTVESTPTTDRPRKRQERSNRPS
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgactacttctaacgatgctcctgtgagctttgactctttaggcttgcctgaaacttta
ttatctgctgtaaaatctatcggtttcgaaaactcaactgatattcaagcaaaaactatt
ccgccattattagcgggtaaagatgttttaggtgaagcacaaacaggtacaggtaaaact
gctgcctttggtttacctgcattggctaaaattgatgtttcattgaaaaagccacagtta
atggtgttagcaccaacacgtgaattagcgatgcaagttgctgaagccattgaaagcttc
ggtaaaaatatgaaaggtttattggttgctactttatacggtggtcaatcataccagcca
caatttcaacaattagagcgtggcgctcaagttgttgttggcacacctggtcgtttaatg
gatcacttacgtcgtaagagtctaaaactaggtaacttatctttttgtgtacttgatgaa
gctgatgaaatgcttaacatgggtttccttgaagacattcagtggatacttgaccattta
ccagaaacgacgcaaatggctttgttctctgcaactatgccaccagcaattcgtaaaatt
gctaaccgtttcttaaaagatccagaacatattaaaattgctgctgttaaacagtcaaaa
gcaaatatttctcaatttgcttggaaagttagtggcattcgtaaaattaccgctttagag
cgtatagctgaaatcgttgattatgatgcgatgatagttttcgtacgtactcgtagcgac
acggtagaagttgcagaacaattagagcgagctggttacccagcattagctttaaacggc
gacatgaaccaagcacagcgtgaacgttgtatcgaacaaatgaaatcaggtaagtcatct
atattagtggcaactgatgttgttgctcgtggtttagatattccacgtatttcattagtg
gttaactatgatttaccaggcgataatgaagcttatgttcaccgtatcggtcgtacaggt
cgtgcaggtcgtgaaggtatgtcaattgcatttgttcgtcctcgcgaaatgcactctcta
cgtcattacgaacgtttaacttcaggtgttattaacacttatgaattaccaaatattgaa
gaaattggtaaaaaacgtattgaacgtacacgtgttgaaatggcacaaattgttgcagat
aaagatttagtaaacatgcgtgaaattgttgaagcaatggccaatgaatcagagctttct
atgactgatttagctgcagctttattgttccaaaaacaattaaaccagccattacaacca
aaagaagatcctaagcctcgtcgtgaaacgcgtgagcgtagtgaccgtgattctagaagt
gagcgtggtggtcgtaacgaaagtcgtggcggcagaaatgaacgtggtggtgaacgtggc
gctgagcgtggtggcgaacgtgctcctcgtaaagttaaagttaaccgtaccgacgttgat
tggcagacataccgtttagaagtaggtaaagagcatggtgcacgtcctggtgatatcgtt
ggcgcaatcgctaacgaaatttcgttagatagtagctacattggtgcaattaacttacat
gataaacatacttatgttcagttaccaaaaggcatgccagagaaatcatttgagcaatta
aagcgtgttaaaattcgtcgtcaatcattagaaattacggtttcagatgttaagacggtt
gaatcaacaccaacaactgatcgtcctcgtaaacgtcaagagcgttctaatcgtcctagc
tag
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