Clostridium pasteurianum DSM 525 = ATCC 6013: CPAST_c13370
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Entry
CPAST_c13370 CDS
T03811
Symbol
ligA1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpae
Clostridium pasteurianum DSM 525 = ATCC 6013
Pathway
cpae03030
DNA replication
cpae03410
Base excision repair
cpae03420
Nucleotide excision repair
cpae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPAST_c13370 (ligA1)
03410 Base excision repair
CPAST_c13370 (ligA1)
03420 Nucleotide excision repair
CPAST_c13370 (ligA1)
03430 Mismatch repair
CPAST_c13370 (ligA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpae03032
]
CPAST_c13370 (ligA1)
03400 DNA repair and recombination proteins [BR:
cpae03400
]
CPAST_c13370 (ligA1)
Enzymes [BR:
cpae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CPAST_c13370 (ligA1)
DNA replication proteins [BR:
cpae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CPAST_c13370 (ligA1)
DNA repair and recombination proteins [BR:
cpae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CPAST_c13370 (ligA1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPAST_c13370 (ligA1)
MMR (mismatch excision repair)
DNA ligase
CPAST_c13370 (ligA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CPAST_c13370 (ligA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
DNA_ligase_ZBD
5_3_exonuc
DNA_pol_lambd_f
BRCT_2
RNA_ligase
DUF669
Motif
Other DBs
NCBI-ProteinID:
AJA47436
UniProt:
A0A0H3J0R4
LinkDB
All DBs
Position
1439985..1441979
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AA seq
664 aa
AA seq
DB search
MKDKLKRMEDLIEELNKYSYEYYTKDNPSVSDREYDMKYDELLTLEKETGTVYPYSPTLR
VGDVVLPEFQKYTHIARLWSLDKAQSFNALEEWHNRNVKFINNYNNLNEEKLPPIKYIVT
KKFDGLTVNCTYDNNGILVKAATRGTGEIGEDVTQQVKTIKSIPLKIKNNALIEVHGEAI
MTKEAFNEYNKSAAAPLKNLRNGAAGALRNLNVKETARRRLSAFFYDVGYNEGEPFKSYK
EMLNFLIEKKFPVDEYMGECSNLEEVKREIEIVRNLRETLSYDIDGAVIVIDDMRTRELM
GYTVKFPKWAIAFKFEAEEATTKLLSVEWNVGRSGRVTPTAILQPVELAGATVKRATLNN
MDDIQRKGIKIGSNVFVRRSNDVIPEIMGVASERDDQQEIMPPKMCPYCGSELVQDGVHY
FCENTLSCKPQLVKSIVHFASREAMNIEGFNEKTAEQLFEKRDIKSITDLYRIKKEDLLD
LDKFAEKKAEKLVKAIEKSKNCELSSFIYALGIANVGKKTAKDIVKKFKTLEEVMSCTYE
ELISIQDIGEIVAKSVLEFFNEDKIINTIQELISVGVTPYYEEDTVKDNPFLGKTVVVTG
TLENFSRSEIKEKIESLGAKVSGSVSKKTDFVLAGKNPGSKYDKALELKVEIITEESFYK
LLNN
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaaggataaattaaagagaatggaagatcttatagaagaattaaataagtattcctat
gaatattatacaaaggataatcctagtgtttctgatagagaatatgatatgaaatatgat
gaacttctaactttggagaaggaaaccggtacagtttatccttattcaccaaccctgaga
gtaggggatgtggtattgccggagttccaaaaatatacacatatagcgagactctggagc
cttgataaagctcaatcctttaatgcgctggaagaatggcataataggaatgtaaagttt
atcaacaattataataatttaaatgaggagaagttgcctcctataaaatatattgtaact
aaaaagtttgatggattaactgtaaattgtacttatgataacaatggcattctagtaaag
gctgctacaaggggaactggtgaaataggagaagatgtaacccaacaggtaaaaaccata
aaatctattccactgaaaattaaaaataatgctttaattgaagttcatggtgaagccata
atgactaaggaagcttttaatgaatataataaatcagcagcagctcctcttaaaaatctt
agaaatggagctgctggtgctctaagaaatttaaatgtaaaagagacagctagaagaaga
ctttctgccttcttttatgatgtgggctataatgaaggtgaaccttttaaaagctataaa
gaaatgctaaattttctaattgaaaaaaaatttcctgtagatgaatacatgggagaatgt
tctaatttggaagaagtaaagagagaaatagagattgtgaggaatttaagagaaacttta
agctatgatatagatggtgcagttattgttatagatgatatgagaaccagagaattgatg
ggatatacagttaaatttccaaaatgggcaatagctttcaagtttgaagctgaagaagct
actactaaacttctttctgtagaatggaatgtgggaagaagtggaagagtgactcctaca
gctatacttcaaccagtagagcttgcaggagctacagtaaaaagagccactcttaataat
atggacgacatacagagaaagggtataaaaataggaagtaatgtttttgtaaggagatcc
aatgatgttattccagaaataatgggagtagcgtcagaacgtgatgatcagcaggagata
atgcctccaaaaatgtgtccttattgtggcagtgagcttgtacaagatggcgtacattat
ttctgtgaaaatacattatcctgtaagccccagctggtaaaaagtatagtacattttgcc
agcagagaagctatgaatatagaaggctttaatgaaaaaactgcagaacagttatttgaa
aaaagagatataaaatctataacagatctgtatagaataaaaaaggaagatcttttggac
ttagataagtttgcggagaaaaaggcagaaaagcttgtaaaagctatagaaaaaagtaaa
aattgcgaattgtcatctttcatatatgcccttggtatagcaaatgtaggtaaaaaaact
gcaaaagatatagtcaaaaaatttaaaactctggaagaagtaatgagttgtacctatgag
gaattaatttccatacaggatataggagaaatagttgctaaaagtgttttagaatttttt
aatgaggataaaataataaatacaatacaagaactgatttcagttggagtaacgccttat
tatgaagaagatacagttaaagataacccatttttgggtaaaacggtagtggtaacaggt
actttagaaaatttcagcagaagtgaaataaaggaaaaaatagaatccttaggagcgaag
gtatctggcagcgtcagtaaaaaaacggattttgtattggcaggtaaaaatccaggatct
aaatatgataaggcattagaattaaaggttgaaataataactgaagaaagtttttacaaa
ttattaaataattag
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