Clostridium pasteurianum DSM 525 = ATCC 6013: CPAST_c39190
Help
Entry
CPAST_c39190 CDS
T03811
Symbol
polC
Name
(GenBank) DNA polymerase III PolC-type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
cpae
Clostridium pasteurianum DSM 525 = ATCC 6013
Pathway
cpae03030
DNA replication
cpae03430
Mismatch repair
cpae03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPAST_c39190 (polC)
03430 Mismatch repair
CPAST_c39190 (polC)
03440 Homologous recombination
CPAST_c39190 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpae03032
]
CPAST_c39190 (polC)
03400 DNA repair and recombination proteins [BR:
cpae03400
]
CPAST_c39190 (polC)
Enzymes [BR:
cpae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CPAST_c39190 (polC)
DNA replication proteins [BR:
cpae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CPAST_c39190 (polC)
DNA repair and recombination proteins [BR:
cpae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CPAST_c39190 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NI
HHH_6
DNA_pol3_a_NII
tRNA_anti-codon
RNase_H_2
Rv2179c-like
DEDDh_C
HHH_3
Phi-29_GP16_7
YhfH
DNA_alkylation
Rubredoxin
Motif
Other DBs
NCBI-ProteinID:
AJA49957
UniProt:
A0A0H3J9E5
LinkDB
All DBs
Position
complement(4177927..4182276)
Genome browser
AA seq
1449 aa
AA seq
DB search
MKRINEIFSDYTVKGNINTALVESVVLSKKSKRLEMKISSDKYIEIREFQDLNRFIRKRF
SLRDSIISVKYADGTDKKPIEEELKNIVFLLADKHPVLKTILNNSEFQVDENTINFNFKI
AVSNFLKSMNYDKQLYKAIKTFYGTTYKINFVDKVNSGELNLQEEINNKKMFEVINKIKK
DLNSNSPKLSKEVGNKKQEVKAEIETNGKKIDSSLIVGRNAKIKETVIKITDITPDEGRI
ALEGEISNMEAKELKSGKTLVSFDLYDGSSSMTCKTFLKPGEDDKVLPKLKKAKGVKLVG
NAGYSKFSGEVEMIANTIIETQGVKRAKRQDNTEVKRVELHMHTQMSQMDAMTSATDLIK
RAMSWGMRSIAITDHGVVQAFPEAHKLLGRDNPDMKVLYGVEAYLAPDKKPSVTNTKGQS
IDTTYCVLDLETTGFSPVTEKITEIGIMKYKEGKVIDQFSCFVNPEKPIPARVVEVTNIT
DDMVRNAETIEQVFPKMLEFIKGSVLVAHNAGFDVGFLKHNARVLGYDFDFTYLDTLSLA
QEVFPDFKTYKLGRIAKHLGIKVEVAHRALDDVDTTVKVFEVMLGKLRERGCQTIEDIDL
YASDEESKKQEYKKLRTYHAIIFAKNYVGLKNLYRLVSYSNLDYFYKKPRILKSMYKKYS
EGLILGSACSEGELYQAILLGKSDEEIEAIAEEYDYLEIQPLGNNDYLVRQEQVPNREYL
KEINKKIIHLGEKLNKLVVATGDVHFMDPEDEIYRRILEAGQGFKDADNQAPLYLRTTEE
MLQEFSYLGKEKAYEVVVTNTNKISDMCERISPISPVKATPHIDGCEQTIKDITYEKAHE
LYGDPLPELVKQRLDKELESIIKNGFSVMYIIAQKLVWKSNEDGYLVGSRGSVGSSVVAY
MTGITEVNALPPHYRCPKCKHSDFKDYGFKNGFDLPDKCCPVCGEQMAKDGIDIPFETFL
GFNGDKEPDIDLNFSGEYQAKAHKYTEVIFGKGTTFKAGTIGTVAEKTAFGYVKKYLDEK
NLTVNKAEITRISKGCTGIKRTSGQHPGGIIVVPKGREIFEFCPVQHPADDPNSDIITTH
FDYHSIDQNLLKLDILGHDDPTVIRMLQDITGVDPKTIPMDEKKTMSIFSSTEALGVTPE
QVNSKVGTFGIPEFGTKFVRGMLLDIMPKTFTDLICISGLSHGTDVWLGNAKDLIDEGIV
TSISEAVCTRDDIMVYLIKKGLPPNSAFKIMETVRKGKALKEPKFVEYEALMREHEVPEW
YIESCKKIKYMFPKAHAAAYVMMAFRIAWFKVHIPKAYYAAYFTIRAKAFDAEFMIFGKE
KVKAKMKEIESMGMQAPPKDKDMYDDLELVLEMYERGIKILPIDLYKSHATQFLVEEEGL
RPPINSISGMGNVAAEGIYNAAQEEIPINSVEDLKKRAKIGNSAIDSLRKFGCLKGLPEK
DQLSFFDAI
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaataaatgaaatttttagtgattatacagtaaagggtaatataaatactgcc
cttgtagaatcggtagtattaagcaagaaaagtaaacgtctggagatgaaaattagttca
gataaatatattgaaataagggaatttcaagatcttaacagatttataagaaaaagattt
tcattaagagattctataatttctgtaaagtatgctgatggaacggataaaaagcctata
gaagaggaacttaaaaatattgtatttttactggcggataaacatcctgttttaaagaca
attttaaataatagtgaatttcaggtagatgaaaatactataaattttaattttaaaatt
gctgtatcaaattttttaaaatctatgaattatgacaagcaactttataaggctataaaa
acattttatggtactacatataaaataaattttgttgataaggtaaatagtggagaatta
aacttacaagaggaaataaataataagaaaatgtttgaggttataaataagattaagaag
gatttaaacagtaatagtcctaaattgtctaaggaagttggaaataaaaaacaggaagta
aaagcagaaatagagaccaatggtaaaaagattgattcatccttgatagtaggaagaaat
gctaaaattaaggaaactgtaataaagattactgacattacacccgatgagggtaggata
gccttagagggtgaaatatccaatatggaagcaaaggaattgaagagcggaaagacatta
gtttcctttgatctgtacgatggttcaagttctatgacttgtaagactttcttgaagcca
ggtgaagatgataaagtattacctaagcttaaaaaagctaagggcgttaagcttgtagga
aatgcaggttatagtaaattttctggggaagttgagatgattgctaataccataatagaa
actcaaggtgtaaagagagctaagagacaggataatacagaggtgaagagagttgagctg
catatgcatacacagatgagtcaaatggatgccatgaccagtgctactgacttgattaaa
agagctatgagctggggcatgaggtcaattgccataacagatcatggagtagttcaggcc
tttccagaggcacataagcttttaggtagagataatcctgatatgaaggtgctgtatgga
gtagaggcctatttggctccggataaaaagccatcagtaacaaatactaagggccaaagt
attgacaccacgtattgtgtgctggatttagaaaccaccggattttcaccagtaactgaa
aaaattactgaaataggaatcatgaaatataaagagggtaaggtaatagaccagttcagc
tgttttgtaaatcctgaaaagcctattcctgcaagggttgtagaggttactaatataact
gatgatatggtgagaaatgctgaaactatagaacaggtttttcctaaaatgttggagttt
attaaggggagtgttttagttgctcacaatgctggatttgatgtgggatttttaaagcat
aatgctagagttttaggctatgactttgactttacatatttagatactttgtctctggca
caggaggttttccctgattttaaaacctataaattaggaagaattgcaaaacaccttggt
ataaaggtggaagttgctcacagagctttagatgatgttgatactactgttaaggttttt
gaagtaatgcttggaaaactaagggaaagaggatgccaaaccattgaggatatagattta
tatgcttcagatgaagagtctaaaaagcaggaatataaaaagcttaggacttatcatgca
ataatatttgcaaaaaattatgtgggcttaaagaatttatacagacttgtatcttattcc
aatttagattatttctataaaaagcctcgtatattaaagagtatgtataaaaaatattca
gagggtttaattcttggtagtgcttgtagtgaaggagaattatatcaggcaatacttctt
ggaaaatcagatgaggaaattgaagctattgcagaagaatatgattatctggaaattcag
cctctaggcaataatgattatttagtaaggcaggaacaggtacctaacagagaatatcta
aaggaaattaataaaaaaattatacatcttggagaaaaactgaataaacttgtagtagct
acaggtgatgttcatttcatggatcctgaggatgagatatataggcgtatacttgaagcc
ggtcagggctttaaagatgcagataatcaggctccattatatttaaggactaccgaggaa
atgcttcaggagttttcctatttaggtaaagaaaaggcttatgaggttgtagttacaaat
actaataaaatatcggatatgtgcgagagaataagtccaatatcaccagtaaaagctaca
ccacatatagatggctgtgaacagaccattaaggatattacctatgaaaaagctcatgaa
ctgtatggagatccacttcctgaactagttaagcaaagactggataaggagctggaatcc
attataaaaaatggtttctccgtaatgtatataattgctcaaaaactagtatggaaatca
aatgaagatggatatctagtcggttccagaggttccgttggttcctctgtagtagcatat
atgactggtataacagaggtaaatgcactgccgcctcattacaggtgtccaaaatgcaag
cattctgattttaaagattatggttttaaaaatggtttcgacttgccggataaatgttgt
cctgtatgtggagagcaaatggctaaggatggaatagatattccctttgaaactttctta
gggttcaatggagacaaagaaccagatatagacttaaacttttcaggagaataccaggca
aaggcacataaatatacagaggttatctttggaaagggcacaacttttaaggccggaact
ataggtactgtagcggaaaaaacagcctttggatatgtaaaaaagtatttggatgaaaag
aatcttacagtaaataaggcagagattactagaatctcaaaaggctgtacaggaataaaa
agaacttcaggtcagcatcctggtggaataattgttgtgcctaagggaagagaaattttc
gaattttgtcccgttcagcatcctgctgatgatccaaattcggatattataacaacccat
tttgattatcactctattgatcagaatctattgaagctggatatattggggcatgacgat
ccaacagttataagaatgctgcaggatataactggagtagatccaaaaactatacctatg
gatgaaaagaaaactatgtctatattttcatctacagaagctctaggagtaacacctgag
caggtaaattcaaaggtgggaactttcggtatacctgagtttggtaccaagtttgtaaga
ggaatgcttttagatattatgccaaagacctttacagatttaatatgtatatcaggactt
tcccatggtactgatgtgtggcttggaaatgccaaggacttaattgatgagggaatagtc
accagtataagtgaagcagtatgtacaagagatgatatcatggtttatcttatcaaaaaa
ggtctgcctccaaactctgcctttaagataatggagacagtacgtaagggaaaggcatta
aaggagcctaaatttgtggaatatgaggccttaatgagggagcatgaagtaccggaatgg
tatatagaatcctgtaaaaagataaagtatatgtttcctaaggctcatgctgcagcttat
gtaatgatggcctttagaatagcctggtttaaggttcacatacctaaggcttattatgca
gcatacttcaccatcagagcaaaagctttcgatgcagaatttatgatttttggaaaagaa
aaggttaaagcaaagatgaaggaaattgaaagtatgggtatgcaggctcctcctaaggat
aaggatatgtatgatgatttggaattggttttggaaatgtatgaaagaggcattaaaatt
cttcctattgatttgtataaatctcatgccacacaatttttggtggaggaagagggattg
aggcctcctataaatagtatatcaggtatgggaaatgtggcagcagaggggatatataat
gcagcccaagaggaaatacctataaactctgtagaagatttgaaaaaacgtgctaaaata
ggtaattcagctatagattcactaagaaagtttggatgtttaaaaggtcttcctgaaaaa
gatcaattaagtttttttgatgcaatttag
DBGET
integrated database retrieval system
