Caminibacter pacificus: C6V80_03080
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Entry
C6V80_03080 CDS
T06023
Symbol
truD
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
cpaf
Caminibacter pacificus
Brite
KEGG Orthology (KO) [BR:
cpaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpaf03016
]
C6V80_03080 (truD)
Enzymes [BR:
cpaf01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
C6V80_03080 (truD)
Transfer RNA biogenesis [BR:
cpaf03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
C6V80_03080 (truD)
Prokaryotic type
C6V80_03080 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
QCI27979
LinkDB
All DBs
Position
558393..559448
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AA seq
351 aa
AA seq
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MIYSHAPINFHFNKNSENFVVEEIPLYPFAHTGEWLMLKVRKKGLTTDEMLKRISSATGI
KLKEMGYAGLKDKEGMTIQWISVPRKYRDEINKFQDKQIKIVEQDLHRNKLKIGHLKGNK
FFVRLKKVLPVDAKKLDNVLKEIKKYGIPNFFGYQRFGKFGNNWEEGKAIIEGDKFVKNR
KLEKFLISAYQSKLFNDWLNERIKLSNIFDLSEKELQFAGYDKELIKFVKAQKHPFKLLP
GDVMSHYPVGKFFYLENVEDTERFLNKDITVTGLLPGKKALRAKDKAREIEEKYDELIPA
KGDRRAAWIFPEILEKNYLKDYAQYEIVFTLPKGSYATVLIDILKNGIKLS
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgatatattctcatgcaccgataaactttcattttaataaaaacagcgaaaatttcgtt
gttgaggagatacctctttatccgttcgctcatacgggcgagtggcttatgctaaaggtt
agaaaaaaaggtttaacaaccgatgagatgttaaaaagaatctcaagtgctacaggtatc
aaactaaaagagatgggttatgcaggtcttaaagataaagaaggtatgactattcaatgg
ataagcgtgccgagaaaatatagagacgaaataaataaatttcaagataaacaaattaaa
atcgtcgagcaggatttgcatagaaataagcttaaaattggacatttaaaaggtaataag
ttttttgttaggttaaaaaaagtacttcctgtggatgcaaagaagcttgataatgtgtta
aaagagattaaaaaatacggaattccgaactttttcggatatcaaagattcggaaaattc
ggaaataactgggaagagggcaaggctataatcgaaggtgacaaattcgtaaagaacaga
aaacttgaaaaatttttaataagcgcttatcaatcaaaactctttaacgattggctaaat
gagagaataaaacttagtaacatttttgatttaagcgaaaaagagcttcagtttgccgga
tatgataaagagcttataaagtttgtaaaagctcaaaaacatccgtttaaacttttaccg
ggagacgtgatgagtcactatccggtgggtaaattcttttatttggaaaatgtagaagat
accgaaagatttctaaataaagacattaccgtaacgggtcttttgccgggtaaaaaagct
ctaagagctaaggacaaagcaagagaaatagaagaaaaatacgacgagcttattccggca
aaaggcgatagaagagctgcgtggatttttcctgaaatattagagaaaaattatctaaaa
gattatgcacaatacgaaatagtttttacgcttccaaaaggctcttacgctaccgtttta
atagatattttaaaaaacggtattaaattatcttga
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