Carica papaya (papaya): 110816704
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Entry
110816704 CDS
T05151
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110816704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110816704
Enzymes [BR:
cpap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110816704
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110816704
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110816704
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
Motif
Other DBs
NCBI-GeneID:
110816704
NCBI-ProteinID:
XP_021900694
LinkDB
All DBs
Position
Unknown
AA seq
536 aa
AA seq
DB search
MYRYRECVTCCVHPRKLATVQCIACAKLNLSAKDSYHCSPKCLSDSWQNHVERHHLAAET
AANDPANASEQDPIPESCEMWTQIGKSPATLIGENPEVVEGEADDRKWVKIGSSKIYEPT
RDDFGLCLRLVTLAIDSSSCAYLCATVISVTKPVINFPARVHRNMIQLGTTQQISSNDFG
FSVLSYNILSDIFTNRGAYGHCPKWALVWQYRRKNLLEEIIAYDADILCLQEVQSDHFEN
FFQPELAKVGYSAAFKKKAGEVCVGNDLFAADGCATFYRHDMFKEIMRDELEYAKAARPL
VEVLQPEFQDIVARRLNKDNVALVVILESVERERSENEFPPRICVANTHICAGAHTPDVK
LLQITKLVDGLERIAEAKVPILLCGDFNVLPTSNAYAYLSKGRINPLNTREPDPLRLLRF
LKLTHSLSLASAYASLAPNTSVEETQLRRMLDCEPIFTNFTPNFLGTLDYIFYTANCFMV
EGLLELLDQESLGRGLPSPIWSSDHIAIMAKFRFKLPSSWKESPPHTPSKIWFTEE
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgtataggtaccgggagtgtgttacttgttgtgttcatcctcgtaaactggctactgtt
caatgcatagcatgtgctaaactgaatctctcggcgaaggattcataccattgctctcca
aagtgcctctctgattcatggcaaaaccatgtggaacgtcaccatctggcagcggagacc
gccgccaacgacccggcaaatgctagcgagcaagatccgatacctgaaagctgtgagatg
tggacccaaattggcaaatccccggccacgttaatcggtgagaatccagaggtggtggaa
ggagaagcagacgacagaaaatgggttaagatcgggtcatcaaaaatttatgaacccacg
agagatgattttggtttgtgtttaaggcttgtaactttagccattgacagctcgagttgc
gcttatctgtgtgcgacggtgatttcggtgacgaagcctgtgattaactttcctgctcgt
gttcatcgcaacatgatccaattgggaaccactcagcagatatcttctaatgactttgga
tttagtgttctatcatataatatcctttctgatatctttactaatagaggtgcgtacgga
cactgccctaaatgggcccttgtctggcaataccgccggaagaatttgctcgaggaaatc
attgcctatgatgccgatattctgtgtctccaggaggtacagagtgatcactttgaaaat
ttcttccagcctgagcttgccaaagttggttactctgctgcattcaagaaaaaggccgga
gaggtgtgtgtgggaaacgacttatttgcagctgatgggtgtgcaacattctaccgtcat
gatatgttcaaagaaattatgagagatgagcttgagtatgctaaggcagcacgacctctc
gtggaagttttgcaacctgaattccaagatatagtcgcgcgtcggctgaacaaggacaat
gttgcgcttgttgttatactggaatcagtggaaagagaaaggtctgagaacgagtttcca
cctcgaatttgcgtggcaaatacacatatatgtgcaggtgcccacactcctgatgtcaaa
ttacttcagattacgaagctagtcgatggactggaaaggattgcagaggcaaaagttcct
atactgctttgtggggatttcaacgttcttcccaccagtaacgcttatgcatatctaagt
aaaggtaggattaatcctctcaacaccagagaacctgatcccttgaggctattgcgtttt
ctcaagcttacccattccctttctctggcgagcgcttatgcttctcttgctcctaataca
agtgttgaggaaacccagctgaggaggatgttggactgtgaacccattttcactaacttc
acgccaaatttccttgggactctagattatattttctacacagcaaactgcttcatggtt
gaaggtctactggaacttctcgaccaggagagcttgggacgtggtcttccatcaccaata
tggtcatcagaccatattgccatcatggctaagttccgattcaagcttccctcatcctgg
aaagaatctccacctcatactccttccaaaatatggttcacagaagagtaa
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