Cupriavidus pauculus: EHF44_12270
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Entry
EHF44_12270 CDS
T05738
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cpau
Cupriavidus pauculus
Pathway
cpau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHF44_12270 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpau03019
]
EHF44_12270 (rnr)
03016 Transfer RNA biogenesis [BR:
cpau03016
]
EHF44_12270 (rnr)
Enzymes [BR:
cpau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EHF44_12270 (rnr)
Messenger RNA biogenesis [BR:
cpau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EHF44_12270 (rnr)
Transfer RNA biogenesis [BR:
cpau03016
]
Prokaryotic type
tRNA degradation factors
EHF44_12270 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
HTH_12
HTH_11
CSD
Motif
Other DBs
NCBI-ProteinID:
AZG14145
UniProt:
A0A3G8H1L0
LinkDB
All DBs
Position
1:2281145..2283766
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AA seq
873 aa
AA seq
DB search
MNQNNYPIPSREEILGVLRTSGSPLSAGDIAKALAVTRKEHDGFQKRLAAMERDGQIELN
RKGRYELAHQPNFVVGRVQGHRDGFGFLIRDDGEDDIFLPERELQKAMHNDRAQVRVVGY
DRRGRPEGQIVEIVERANRFVIGRLLSENGVLVVAPEDKRIGQDILIPPKAQGKARVGQV
VSVELVEWPDRYVQPVGRVVEVLGEIDDPGMEIEIAVRKYGVPHEFSAAAAKEAQALPDE
VRDADLDHRIDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGWRLIVAIADVSHYVRP
GTPLDADALDRATSVYFPRRVIPMLPEKLSNGLCSLNPNVDRLCMVCDAVITAKGELKGY
QFYPAVMHSAARLTYNEVWAVLSNTKGPEAHKRAELVPHLQNLYELFQVLLKARRERGAI
DFDTTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAADFLERFKHPALFRIHA
GPSEEKLKNLREFLRTAGLSLGGGDKPQASDYAEVMDKIKSRPDAPMLQTMLLRSMQQAV
YSPDNIGHFGLAYEAYAHFTSPIRRYPDLLVHRSIKAILAHTKYRPAFVTGTELNTQISP
KARRMQAADAEKRAENAAARARRDEGIWDELGLHCSANERRADEASRDVEAWLKCYFMRD
KLGSDFAGTISAVTSFGIFVQLDELYVEGLVHVTELGSDYFQYDEARNELRGERTGIRYR
LTDRVRVQVSRVDLDARKIDFRLVQEPSAKTLRARAGVPEQPRVPAAHAVPARKKGRQLA
ALLGGTSKPEESFDETLDRVIEEQPVFEAVITPVKPREANVGHAAHPGRKAPAGKPEKRA
AKPKPAHLKTPRKAAAKRPAKPAGKTGRPARKR
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcagaacaactatccgatccccagccgggaagaaatcctcggcgtactgagaact
tcggggtcgcccctgtcggccggcgatatcgccaaggccctggccgtcacgcgcaaggag
catgacggctttcagaaacggctcgccgccatggagcgcgacggccagatcgaactgaat
cgcaagggccgctacgagctggcccatcaaccgaacttcgtggtcgggcgcgtgcagggc
catcgcgatggctttggcttcctgatccgcgacgacggcgaggacgacatcttcctgccc
gagcgcgaactgcagaaggccatgcacaacgaccgcgcgcaggtgcgcgtggtggggtac
gaccgtcgcggccgtcccgaggggcagatcgtcgagatcgtcgagcgcgccaaccgcttc
gtgatcggccgcctgctgtccgaaaacggcgtgctggtggtggcgcccgaggacaagcgc
atcgggcaggacatcctgatcccgcccaaggcgcagggcaaggcccgcgtcggccaggtg
gtcagcgtcgagctggtcgaatggccggaccgctacgtgcagcccgtgggccgcgtggtg
gaggtgctgggcgagatcgacgaccccggcatggaaatcgagatcgcggtgcgcaagtac
ggcgtgccgcacgagttctcggccgccgccgccaaggaagcccaggcactgcccgacgag
gtgcgcgacgccgatctggatcaccggatcgacctgcgcgacgtgccgctggtgacgatc
gacggcgaggatgcgcgcgatttcgacgacgcggtctactgcgagccggtcaagatcggc
cgcaccaagggctggcgcttgatcgtggcaattgccgacgtgtcgcactacgtgcggccc
ggcacgccgctggacgccgacgcgctggaccgtgccacgtcggtttacttcccgcggcgc
gtgatcccgatgctgcccgagaagttgtcgaacggcctctgctcgctgaacccgaacgtc
gaccgcctctgcatggtctgcgacgccgtgatcacggccaagggcgagctgaaggggtac
cagttctacccggccgtcatgcactcggccgcgcggctgacctacaacgaggtctgggcc
gttctgtcgaacaccaagggcccggaggcgcacaagcgcgccgagctggtgccgcacctg
cagaacctgtacgaactgttccaggtcctgctcaaggcccggcgcgagcgcggcgcgatc
gacttcgacaccaccgagacctacatcgtctgcaacgcgcagggcaagatcgagcagatc
ctgccgcgcacccgcaacgacgcccaccggctgatcgaggaatgcatgctgacggccaac
gtctgcgcggccgacttccttgagcgcttcaagcatccggcgctgttccgcatccacgcg
gggccgagcgaggaaaagctcaagaacctgcgcgaattcctgcgcacggccgggctgtcg
ctgggcggtggcgacaagccgcaggcatcggattacgccgaggtgatggacaagatcaag
tcccgccccgacgcgccgatgctgcaaacgatgctgctgcgctcgatgcagcaggccgtc
tacagcccggacaacatcggccactttggcctggcgtacgaggcctacgcccacttcacc
agtccgatccgccgctatccggacttgctggtgcaccgctcgatcaaggcgatcctggcg
catacgaagtaccgcccggcctttgtgacgggcaccgagctgaacacgcagatttcgccg
aaggcacgccgcatgcaggcggccgacgccgagaagcgcgccgagaacgccgccgcccgc
gcccgccgcgacgagggcatctgggacgaactggggctgcactgctcggccaacgaacgc
cgcgcggacgaagcctcgcgcgacgtcgaagcctggctgaagtgctacttcatgcgcgac
aagctcggcagcgacttcgccggcacgatcagcgcggttacctcgttcggcatcttcgtg
cagctcgacgagctgtacgtggaggggctggtgcacgtgaccgaactgggcagcgactac
ttccagtacgacgaggcgcgcaacgaactgcgcggcgagcgcaccggcatccgctaccgg
ctgaccgatcgcgtgcgcgtgcaggtgtcccgcgtggacctggacgcgcgcaagatcgac
ttccgcctggtgcaggagccgtcggccaagacgctgcgcgcccgcgccggcgtgcccgaa
cagccgcgcgtaccggccgcccacgcggtgccggcgcgcaagaagggccgccagctggcg
gcgctgctgggcggaacgtcgaagccggaggaatcgttcgacgaaacgctcgaccgcgtg
atcgaagagcaacccgtgttcgaagcggtgatcacgccggtcaagccgcgtgaagccaat
gtcggacatgccgcacatccgggccgcaaggcgccggccggcaagccggaaaagcgtgcg
gccaagcccaagcccgcgcacctgaagacgccgcgcaaggcggcggccaagcggccggcc
aagccggctggcaagacgggacgcccggcccgcaagcggtaa
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