KEGG   Cupriavidus pauculus: EHF44_19510Help
Entry
EHF44_19510       CDS       T05738                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cpau  Cupriavidus pauculus
Pathway
cpau03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cpau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EHF44_19510 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cpau03400]
    EHF44_19510 (ligD)
Enzymes [BR:cpau01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EHF44_19510 (ligD)
DNA repair and recombination proteins [BR:cpau03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EHF44_19510 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S ParE_toxin
Motif
Other DBs
NCBI-ProteinID: AZG15661
UniProt: A0A3G8H557
LinkDB All DBs
Position
2:306326..308950
Genome map
AA seq 874 aa AA seqDB search
MAKTASATRPASRKPADAALGKYQDMRDFGATPEPSGKTARGRRAAANGAHAFVIQKHAA
RRLHYDFRLELDGTLKSWAVPKGPSFDPADKRMAVHVEDHPLDYADFEGVIPAGHYGAGT
VIVWDRGVWIPDEDPEAGYRAGKLKFELRGEKLQGHWTLVRMGGRKARDDNAWLLIKERD
AFARPASEFDVVEAMPDSVLAGTARPGKKKAGAAKADAKAKPARGKRTAAIELPEKANPA
ALPLALTPQLATLVEAPPADPTAWQYEIKFDGYRIVARIDGDDVRLFTRNGHDWTSKLRP
LAAEIAGLGWPDGWLDGEIVVVDAQGITDFQALQNAFETAHAEAIQFYAFDLPYYAGHDL
RAVPLAERRALLYRLLADHKSGRVRFSDNFEGDPKDMLDAACRMKLEGIIGKRADAPYVS
TRAGTWIKLKCQNRQEFVIGGYTDPKGSRNGLGSLLLGLHDPDGKLRYVGNVGTGFDTAM
LDALRKQLDGLAADKTPFDPLPRGIKGHWVKPKLVAEVTFGAWTREGRIRHSVFHALRTD
KPASAVTLEKPAKPADKAPKAAAKAAAKTATGRKTSGKTAIGNVAVSHADRVIDKSTGLT
KGDLVTYYARAAALMLPHLKGRPLALVRAPAGIDGEQFFQRHGDTLKLKGVRALDPALWP
GHPPLLEITGADAIVEAAQLNVVEFHTWNALARNIGKPDQIVFDIDPGEGVTWREIQEAA
TLVKAMLDELGLQGFLKTSGGKGLHVVVPLAARAGWDEVRDFSQDVVNHMASTIPDRFVA
KSGPRNRVGKIFIDYLRNGVGATTAAAFSARARPGLGVSIPVSWDELDDLTGAAQWTIAN
VEDRLAELARHDPWAGHDKVRQTLTRARKLLGDG
NT seq 2625 nt NT seq  +upstreamnt  +downstreamnt
atggccaagaccgcctccgccacccgccccgcctcccgcaagccggccgacgccgccctg
ggcaagtaccaggacatgcgcgacttcggcgccacgcccgagcccagcggcaagaccgcg
cgcgggcgccgcgcggcggccaacggcgcccacgcgttcgtcatccagaagcacgcggcc
cggcggctgcactacgacttccggctggaactcgacggcacgctcaagagctgggccgtg
cccaagggcccgagcttcgaccccgccgacaagcgcatggccgtgcatgtggaagaccac
ccgctcgactacgccgatttcgagggcgtgattccggccggccattacggcgcgggcacc
gtcatcgtctgggaccggggcgtctggattccggacgaagacccggaggccggctaccgc
gccggcaagctcaagttcgaactgcgcggcgaaaagctgcaggggcactggacgctggtg
cgcatgggcggccgcaaggcgcgcgacgacaacgcctggctgctgatcaaggagcgcgac
gcctttgcgcggccagcgtccgaattcgacgtggtcgaggccatgcccgacagcgtgctg
gccggcacggccaggccgggcaagaagaaagccggcgccgccaaggccgacgccaaggcc
aagcccgcgcgcggcaagcgcaccgccgccatcgaactgcccgaaaaggcgaatccggcc
gcgctgccgctggcgctgacgccgcaactggccacgctggtcgaagccccgccggccgac
cccaccgcgtggcagtacgagatcaagttcgatggctaccgcatcgtggcccgcatcgac
ggcgacgacgtgcggctgttcacgcgcaacgggcacgactggacgtcgaaactgcgcccg
ctggcggccgagattgccggcctgggctggcccgacggctggctcgacggcgagatcgtg
gtcgtggacgcccagggcatcaccgatttccaggcactgcagaacgccttcgagaccgcc
cacgccgaggccatccagttctacgcgttcgacctgccctactacgccggccacgacctg
cgcgccgtgccgctggccgagcgccgcgcgctgctgtaccggctgctggccgaccacaag
tccggccgggtgcgcttcagcgacaacttcgagggcgacccgaaagacatgctggacgcg
gcctgccgcatgaagctcgaaggcatcatcggcaagcgcgccgatgcgccgtacgtcagt
acgcgcgccggcacgtggatcaagctcaagtgccagaaccgccaggaattcgtgatcggc
ggctacaccgatcccaagggcagccgcaacgggctggggtcgctgctgctgggcctgcac
gatccggacggcaagctgcgctacgtgggcaacgtgggcaccggcttcgacacggccatg
ctggacgcgctgcgcaagcaactggacgggctggccgccgacaagaccccgttcgacccg
ctgccgcgcggcatcaagggccactgggtcaagcccaagctggtggccgaggtcacgttt
ggcgcctggacccgcgagggccgcatccgccactcggtcttccatgcgctgcgcacggac
aagccagcatccgccgtgacgctggaaaaaccggccaagcccgccgacaaggcgccgaag
gcggcggccaaggcagccgcaaagacggcaactggccgcaagacgtccggcaagaccgcc
atcggcaacgtggccgtcagccatgcggaccgcgtgatcgacaaatccaccgggctgacc
aagggcgacctggtcacctattacgcccgcgccgccgcgctgatgctgccgcacctgaag
ggccggccgctggcactggtacgggcgccggccggcatcgacggcgagcagttcttccag
cgccacggcgacacgctgaagctgaaaggcgtgcgggcgctggacccggcgctctggccc
ggccacccgccgctgctggaaatcaccggcgccgacgccatcgtcgaggccgcgcagctg
aacgtcgtggaattccacacctggaacgcgctggcgcgcaatatcggcaagccggaccag
atcgtgttcgacatcgaccccggcgagggcgtgacctggcgcgagatccaggaagccgcc
acgctggtcaaggccatgctcgacgaactgggcctgcagggctttctgaagaccagcggc
ggcaagggcctgcacgtggtggtgccgctggccgcgcgggccggctgggacgaggtgcgc
gacttctcgcaggacgtggtgaaccacatggccagcacgattccggaccgctttgtagca
aagagcggcccccgcaaccgcgttggcaagattttcatcgattacctgcgcaacggtgtc
ggcgctaccacggcggccgcattttcggcgcgcgcccggcccggcctgggcgtctcgatc
ccggtgagctgggacgagttggacgacctgaccggcgccgcccagtggaccatcgccaac
gtcgaagaccggctggccgaactggcccgccacgacccctgggccggccacgacaaggtt
cgccagacgctgacgcgcgcccgcaagctgctcggcgacggctga

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