Clostridium perfringens 13: CPE1306
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Entry
CPE1306 CDS
T00074
Name
(GenBank) RNA polymerase sigma factor sigma54
KO
K03092
RNA polymerase sigma-54 factor
Organism
cpe
Clostridium perfringens 13
Pathway
cpe02020
Two-component system
cpe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cpe00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CPE1306
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CPE1306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpe03021
]
CPE1306
Transcription machinery [BR:
cpe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CPE1306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_11
HTH_23
HTH_Crp_2
Sigma70_r4_2
HTH_12
HTH_36
Sigma70_r4
MarR
HTH_21
HTH_IclR
HTH_3
HTH_17
HTH_5
HTH_DeoR
HTH_38
HTH_20
HTH_Tnp_ISL3
Homeodomain
HTH_28
MarR_2
DUF357
Motif
Other DBs
NCBI-ProteinID:
BAB81012
UniProt:
Q8XKT7
LinkDB
All DBs
Position
complement(1546057..1547442)
Genome browser
AA seq
461 aa
AA seq
DB search
MLMDFNLNLTQEQKLIMTQQMQLSIKLLQMSTYDLREYIEKEFSENPVLEAQYEDTKEVS
KEQDRLEYKELVKYLESDNYGSQSYGEYDQEGISPFTFISKPESLTDYLEGQILELPIDE
YMRSVCSYMVECLDQKGYLDIKKEELMGELDCSEETFNRALIVLHNLEPAGIGARDLKEC
LEIQLERKGENDPIVKEIIDNHLDDLADNKYQVIAKDLGITPKKAQDYGDLIKTLEPKPS
RGFYTGDEVGFIIPDAEIRKIDGEFLILMNDGVLPMLSVNPLYKDILKDSTNDKEATEYV
KEKIEKAMFLIKSIEQRKSTLYKVLEKILEKQKDYFEKGEKYLKPMTLKEIAEQLEMHES
TISRAIRDKYILTSMGTIKIKNLFVNSISNKEKSDGEEDVTVINIKKALEEVIKEENKAK
PLSDQTISEILKEKGMVISRRTVAKYREELGIKSSSKRKRF
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgttaatggattttaatttgaatttaactcaagagcagaagcttattatgacccagcaa
atgcaactttcaataaaacttttgcaaatgtcgacatatgatttaagagaatatattgaa
aaagaattttcagaaaatcctgtattagaagctcaatatgaagatactaaagaggtatca
aaagagcaagatagattagaatataaagagttagtaaaatatttagagtcagataactat
ggctctcaaagttatggtgaatatgatcaagaaggaatatcaccttttactttcataagt
aagccagaatctttaacagattatttagaagggcaaatattagaattaccaatagatgaa
tatatgagaagtgtatgtagttatatggtcgagtgtttagatcaaaagggatatttagat
ataaaaaaagaagaattaatgggggagctagattgttctgaagagacttttaatagggct
ttaatagttcttcataatttagaacctgccggtataggggcaagagatttaaaggaatgc
ctagaaattcagttagaaagaaaaggtgaaaatgaccctatagttaaagagattatagat
aatcatttagacgatttagcagataataaatatcaagttattgcaaaggatttaggaatt
actcctaaaaaagcacaagattatggagatttaataaaaactttagaaccaaaaccatca
agaggcttttacactggtgatgaagtgggttttataattcctgatgcagaaatacgaaag
atagatggagaattccttatattaatgaatgatggagttttacctatgctttcagttaat
cctttatataaagatatattaaaagatagtactaatgataaagaggctacagagtatgta
aaggaaaaaatagaaaaggctatgtttttaattaaaagtatagagcaaagaaaaagtact
ttatacaaagttcttgaaaaaatacttgaaaagcaaaaggattattttgaaaagggagag
aaatatttaaagcctatgactttaaaagaaatagctgaacaattagaaatgcatgaatca
actatttcaagagctataagggataagtatattttaacttctatgggaacaataaaaata
aagaatctctttgtaaactcaataagtaataaagaaaaaagtgacggagaagaagatgtt
acagttataaatataaaaaaagctttagaagaagtaattaaggaagaaaataaagcaaag
ccattatcagatcaaaccataagtgaaattctaaaagaaaaaggaatggttatttcaaga
agaactgtagcaaaatacagagaagagttaggcataaagtcatctagcaagagaaaaaga
ttttaa
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