KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111779849
Entry
111779849         CDS       T05351                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:3.6.4.13]
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111779849
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpep03019]
    111779849
Enzymes [BR:cpep01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     111779849
Messenger RNA biogenesis [BR:cpep03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     111779849
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD dsrm HA2_N AAA_22 T2SSE nSTAND3 AAA_19 ATPase AAA_16 PhoH
Other DBs
NCBI-GeneID: 111779849
NCBI-ProteinID: XP_023515789
LinkDB
Position
LG18:complement(6881412..6889955)
AA seq 1211 aa
MPYSTFFNAYIRTSMSLSLRTTSSAPFCTASTRFRPWFPHLFTRNLSMGFVNLQCRPGSV
TGIRCTSQSKWIEVAFREKQQDHVRGFKQRNLAFPFLQHQSCSNYGRFAYDDVSSDDSDV
EFGSPHGQMNSSTLENVDEWKWKLTMLLRNNDELEVVSREKKDRRDFDQLSALATRMGLH
SRQYAKVVVFSKYPLPNYRPDLDDKRPQREVVLPFGVQTEVEGHLRLYQSSHHSVTRGRF
SNSYLSKSGIAENCANNNGVFEHQEPSTTQSLVMEKILRRKSLQMRNQQQDWQESLEGQK
MMEFRKSLPAFKERETLLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAARGTSCSI
ICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGIKGRDTRLLFCTTGVLLRRLLVD
RNLKGVTHVIVDEIHERGMNEDFLVIVLKDLLPRRPDLRLILMSATLNAELFCSYFGGAP
TMHIPGFTYPVRAHFLENILETTGYRLTPYNQIDDYGQEKAWKMQKQAQALKKRKTQIAS
SVEDAFEASNFLAYSPRTQESLSCWNPDSIGFNLIEHVLSYIVKRERAGAILVFMTGWDD
INSLKDQLQSHPLLGDPSRVLILACHGSMTSSEQKLIFDKPEDGVRKIVLATNMAETSIT
INDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCV
YDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSNALQPPEPLSVQNAIDYLKTIGA
LDEKENLTVLGQHLSVLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSVRDPFLMPYDKKD
LAESAKAQFAARDCSDHLALVRAYEGWRDAERQQAGYEYCWRNFLSMQTLRAIDSLRKQF
FFLLKDTGLVDFDAENFNNSKPDGHLIRAVICAGLFPGICSVVNKEKSVALKTMEDGQVM
LYLNSVNAGYSKIPYPWLVFNEKVKVNSVFLRDSTGVSDSILLLFGGHVSRGGLDGHLKM
LDGYLEFFMKPALAETYLSLKTELDELVHQKLLNPKLDMQPHNELLSAIRLLVSEDRCEG
RFVFGRHVPVPSKKATNDGPPRQKNGDGAGGDNSKSQLQTLLLRAGHDAPTYKTKQLKNN
QFRSTVIFNGLNFVGQPCGSKKLAEKDAAAEALLWLQGETQSSSQAIDHASLLLKRSKRK
NDRTSRSAKWS
NT seq 3636 nt   +upstreamnt  +downstreamnt
atgccttactcaaccttcttcaacgcctatatcaggacttccatgtccctctccctcaga
accacttcatcggctccgttctgcacagcttcaacgcgcttcaggccttggtttcctcac
cttttcacccggaacctgtccatggggtttgtcaacttgcagtgccgtccaggttccgtc
actggtattcgttgtacgagccaatccaagtggattgaagttgcgttcagggagaaacag
caggaccatgtgaggggttttaagcagaggaatcttgcgtttccgtttttgcagcatcag
tcctgctccaattatggtcggtttgcgtatgatgatgtgtctagtgatgattctgatgtc
gaatttgggtctccgcatgggcaaatgaattcatcaacccttgagaacgtagatgagtgg
aaatggaagttaactatgcttctacggaacaatgacgaactagaagtagtgtcaagggag
aaaaaggatagacgtgattttgatcaactttcagcattggcaaccagaatgggtttgcat
agccgtcaatatgcaaaagttgttgtatttagtaaataccctctgccgaattacaggcca
gacctggatgataagcgaccacagagggaggtggtcttaccttttggggtccaaacggaa
gttgaaggccatctaagattgtaccaatcttctcaccattctgtgacaagaggacgtttc
tcaaatagttacttgtcaaaatctggcattgctgaaaactgtgctaacaataatggagtg
tttgagcaccaggaaccttcaacaacacaaagtcttgtcatggagaaaattcttcgccgc
aaaagtttgcaaatgaggaatcaacagcaagattggcaggaatctcttgagggccaaaaa
atgatggaatttcgcaaaagtctcccagcatttaaagagagggaaacattgttgaaggcc
atttcagagaatcaggtagttgttgtctctggtgaaactggttgtgggaaaaccacgcag
cttcctcagtatatattagaatctgagattgaagctgctcgtggaacttcttgtagtatt
atctgtactcagcctagacgtatttctgccatgtctgtttctgaaagagttgctgcagaa
cgtggagagaaactgggagagtctgttggttataaagttcggctggagggtataaaagga
agggacactcgtcttctcttttgcaccactggtgtactactgagaagattgcttgttgat
agaaatttgaaaggtgtaactcatgttattgttgatgagattcatgaacgtggaatgaat
gaagattttcttgtgattgtcctgaaagatcttcttcctcgacggccagatttgaggttg
atcttaatgagtgcaactctaaatgcagaacttttttgttcttattttgggggtgctcca
acaatgcatattcctggttttacatacccagttcgtgcacactttttggagaatattcta
gagacgactggctatcgattgactccatataatcaaattgatgattatggtcaagaaaag
gcatggaaaatgcaaaaacaagctcaagctctaaagaaaaggaagactcagattgcttca
tctgttgaggatgcatttgaggcgtctaactttttagcatacagtcctcgaactcaggag
tccctatcctgttggaatcctgattcaattggtttcaacctcattgagcatgtcctttct
tacattgtcaagagggagagggcaggtgctatactagtttttatgaccggatgggatgat
ataaactctttaaaagaccagctccagtcacatcctttattaggggatcctagcagagtt
ttgatccttgcatgtcatggttcgatgaccagctctgagcagaaattgatatttgataaa
cctgaagatggagttaggaaaatagtcctagctacgaacatggcagagactagtatcacc
atcaatgacgtggtttttgttgttgactgcggaaaagcaaaggaaacatcctatgatgct
ttaaataacactccttgtttgcttccatcctggatctccaaggctgccgcgcgtcaaaga
agaggtagagctggtcgtgttcaacctggtgaatgttaccatctctatcccagatgcgtg
tatgatgcttttgctgattatcaactgccagaacttttaaggaccccgttacagtctttg
tgtttgcaaatcaagagtctgcaacttggaagtatatcagagttcctatcaaatgcattg
cagccgccagagcctttatcagttcaaaatgccatagactatttgaagacaattggagct
ctagatgagaaagaaaatctgacagttcttgggcaacacttatcagttcttccagttgag
cctaaactgggaaaaatgcttatattaggagctattttcaactgtcttgatcccattatg
actattgttgctggtcttagtgtgagagatcctttcctcatgccatacgataaaaaggat
ttagccgagtcagcaaaagcacagtttgctgcacgtgattgcagtgatcatcttgcctta
gttcgagcttatgagggttggagagatgccgaaaggcagcaagccggttatgagtactgt
tggagaaactttctctccatgcaaactctcagagccatcgactctctgaggaagcagttc
ttctttttgctaaaggacactggtctagttgattttgatgcagaaaacttcaacaactcg
aagcccgatgggcacttaatccgtgcagtcatctgtgctggtttgtttcctggaatttgc
tctgttgtgaacaaagagaaatcagtagctttgaagacaatggaagatggacaggttatg
ctatacttgaactcagttaatgctggctattcaaaaatcccctacccatggctggtgttt
aatgaaaaggtgaaggtcaactcagtctttcttcgggattctaccggggtttctgactct
atccttcttttatttggaggacatgtttcgagaggaggacttgatggtcacctcaaaatg
ctggatggttatttggagtttttcatgaaacctgcattggccgagacttatttgagtctt
aaaacggagcttgatgagcttgttcatcaaaagcttttgaatccaaagttagatatgcag
ccacacaatgaactactatcagcaataaggttgttggtatcggaggatcgctgtgagggt
aggtttgtctttggtcgtcatgtgcctgtaccatcaaaaaaagcgacgaacgacggtcca
cctcgacagaaaaatggcgatggagctggaggcgataattccaagagtcagcttcagacc
ctactcctgagagctggacatgatgcgccaacttacaaaaccaagcaactaaaaaacaac
caattccgatccactgttatcttcaacggattgaacttcgttggccaaccatgtggtagc
aagaaactcgcagaaaaagatgcagctgctgaggctctactatggctacaaggcgagaca
cagtcatcttcccaagctatcgatcatgcttccttacttctcaaaaggagcaaaaggaaa
aacgacagaacatctcgtagcgccaaatggagttaa

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