Cucurbita pepo subsp. pepo (vegetable marrow): 111790432
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Entry
111790432 CDS
T05351
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
3.6.4.13
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111790432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111790432
03009 Ribosome biogenesis [BR:
cpep03009
]
111790432
Spliceosome [BR:
cpep03041
]
Complex A
U1 snRNP components
U1 related factors
111790432
Complex B
111790432
Ribosome biogenesis [BR:
cpep03009
]
Eukaryotic type
Pre-60S particles
Helicases
111790432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
RSRP
Motif
Other DBs
NCBI-GeneID:
111790432
NCBI-ProteinID:
XP_023527087
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All DBs
Position
LG03:10620714..10627209
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AA seq
1166 aa
AA seq
DB search
METGESAPPSLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPVSLPPPLP
LGPHPGVSSSKPTSVSEAHSMPSNGALTPHVQKNHHVPQQEGQSNSQLSQQPGHLMSQQH
SSVAGQATVNHHPGLQMAPDGRQNSSQSNQVMQQQGLFAMSSPHLGQQQVMHQGQKMAHA
NPQMSQHPNQQPPQNPGQPLQNPGQQIPQPSIQHLGQPSMQNQTPLVGQPQGPQPQYGQQ
QLQYIGYQQSVHPSVQHNLQQQVQQSPLGQPFGNHLEQKSAFLKREEDNIQSGNQVGFSS
SQFEQSGGTSSIHNLHPGTNSSQMQQFGSASDQARQFGGSPGNIQQQNPVVQLQHAGTEL
AHRQHHSRFQDQMSPAVMQGQQTSAENLPGRAGNEYYFGRNEGPGVGPLQPRLAAIPMAR
SQQDTRMSGVSFPTAAPGHPSGTNFAAGHSHNMYSHGSGGPPLSNNALIGPPHIGASDVT
NMSPVEVYRQQHEVTATGDNVPSPYMTFEATGFPPEILREIYSAGFSSPTPIQAQTWPIA
LQGRDIVAIAKTGSGKTLGYLIPAFMLLRQCRNNPQNGPTVLVLAPTRELATQIQDEAIK
FGRSSRVCCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIKFRQISLLVLDE
ADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIANDLLVNSVQVNIGSVDELA
ANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSLGRGFGAAAI
HGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGR
TGRAGATGVAYTFFTEQDWKYAADLIKLLEGADQHVPPELRDMAMRGGPSFGKDRGGMGR
FDAVMGGSRWDSGGRGGMRDGGFGGRGGARDGGFGGRGGMRDGGFGGRGNMRDGAAGGRG
GRGDFFPTRGRGRGFGGPAGGHVGWGRGDRGGPHDRFSSVDGRGRGRGQSRFDNRNDFSN
RSRGRSYSRSPERVRTWGYSRSRSRSRSGSRSRSRSSRSWSRSRSRSRSRSRSRSWSRRH
SRSRSRSRSHDNYGRSRERNFDRKDDQPPESVTATSHGTRKSGFDDRGDAGQVPPVAASS
NMEPGKPENGAEDTSDGTVNAAAQVI
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggaaactggagagtctgctcccccttctcttggtcctcgctatgcaccggacgaccct
actcttcccaaaccctggaagggattgattgatgggagcactggactgttatactactgg
aaccctgaaaccaacgtaactcagtatgaaaaaccggtctctttgccaccaccattgccg
ctcggtcctcatcctggcgtctcttcttccaagcctacttcagtttcggaggctcattca
atgccatcgaatggtgcattaacaccgcatgtacagaaaaatcatcatgtccctcaacaa
gaaggccaatcaaatagccaactttctcaacaacctggacatctgatgtcacaacagcac
agttctgttgccggtcaggcaactgttaatcaccatcctggcttgcaaatggcaccagat
gggcgacaaaatagctcacaatcgaaccaggtcatgcagcaacaggggctgtttgcaatg
tcgtcaccgcatcttggccagcagcaggtcatgcatcaaggtcagaaaatggcacatgca
aatccacaaatgtctcagcatccaaatcagcaacccccgcagaatccaggacaaccctta
cagaatccaggacaacaaataccacaaccatcaatccagcatttaggacaaccaagcatg
caaaatcaaacgccattagttgggcagcctcaaggtccgcaaccacaatatggtcagcag
cagcttcagtatatcggctaccagcaaagtgtgcatccaagtgtgcagcacaatttgcag
cagcaagttcaacaaagccctttaggtcaaccatttggcaatcaccttgagcagaagtca
gcttttctgaagagagaggaggataatatccagtcaggaaaccaagttggcttttcttct
tcccagtttgaacaaagtggtggtacctcatctattcataaccttcatcctggaaccaat
tcttctcaaatgcaacaatttggttcagcatcagaccaagcacgacaatttggtggctct
ccaggaaacatacaacagcagaatcctgtggttcaattgcagcatgcaggtactgaattg
gctcatcgccaacatcattctagattccaagatcagatgagcccagcagtgatgcagggg
cagcaaactagtgctgaaaatttgccaggtagagctggaaatgaatattactttggcagg
aatgaagggcctggcgttggtccacttcaaccaaggcttgcagcaataccaatggcaagg
agccagcaggacacaaggatgagtggtgtctcatttccaactgcagcacctggccatcct
agtgggaccaattttgctgctgggcattcacataatatgtacagccatggatctggtggc
ccaccattgtcaaacaatgctttgataggccctcctcatattggagcttcagatgtcact
aatatgtcacctgttgaagtttatcgtcaacagcatgaagtaactgctacgggtgataac
gttccatctccttacatgacatttgaggctactggcttccctccggagatactgagagag
atatattctgctggtttctcttctccaacgccaattcaagcacaaacatggccaattgcc
ctgcaaggtcgggacatagttgccattgctaaaacggggtctggaaaaactttgggctat
ttgattcctgccttcatgcttcttaggcagtgccggaataaccctcaaaatggaccaacg
gtgttggttttggctcctactagggaacttgctactcaaatacaagatgaagctattaaa
tttgggaggtcttccagggtttgttgcacgtgtttgtatggtggagccccgaaaggtcct
cagctaaaggagttagaacgtggtgctgatattgttgtggcaactcctggccggctcaat
gatatacttgaaatgaagatgattaagtttaggcaaatttcacttcttgtgcttgatgaa
gctgatcgaatgcttgacatgggatttgaaccccaaattagaaagattgtgaatgaaata
ccaccacgcagacaaacacttatgtatacagcaacctggcccaaggaagtaagaaaaata
gcgaatgatcttctagtcaattctgtccaggtgaatattggcagcgttgatgaacttgct
gctaacaaggctataactcagtatgttgaagtcgttccacagatggaaaaacagagacgg
ttagaacagattcttaggtcccaagaacggggatctaaggtaataattttttgttccacg
aagaggctatgtgatcagcttgcacgaagtcttggtcgtggttttggggctgctgcaatt
catggagacaaatcgcagggggagcgtgattgggtattgaaccagtttcgtagtggaaag
tccccgatactagttgccacagatgttgctgcccgtgggcttgacatcaaagatataaga
gtggtgatcaactatgattttccaactggagttgaggactatgtccatcgaattgggaga
actgggagggctggagcaacgggagtggcatataccttcttcaccgaacaggattggaaa
tatgctgctgatttgattaaactactggagggtgcggatcagcatgtgcctcctgagttg
cgagatatggctatgcgtggtgggccaagttttgggaaggataggggtgggatgggtcgt
tttgatgcagttatgggcggcagtcgctgggattcaggaggccggggtggcatgagagat
ggtgggtttggtggtcgcggtggtgcaagggatggtgggtttggtggccgtggtgggatg
agagatggtgggtttggtggtcgtggtaacatgagggatggtgctgctggtggacgaggt
gggagaggtgatttctttcctacacggggtagaggacggggtttcggtggccctgctgga
ggtcatgttggttggggaaggggtgatcgcggcgggccacatgataggttcagtagtgtg
gatggtcgtgggcgtgggcgtggacagagtcgatttgataatagaaacgacttcagtaat
aggagtagaggcagaagttacagccgcagtcctgaaagagtccgaacatggggttacagt
cgaagtcgcagtcgcagtcgcagtggtagccgtagtcgtagtcgtagcagtagaagctgg
agtagaagccgtagcaggagtaggagcagaagcaggagtcggagttggtcccgccgtcac
agccgaagccgtagtcgtagccgtagccacgataattacggtcgttcgcgtgagcggaac
ttcgataggaaagacgaccaacctccagaatcagtaactgcaacgtctcatggcacacga
aagagcggttttgacgatagaggtgatgcggggcaggttcctcctgtggcggccagcagt
aatatggagccagggaaaccagaaaatggtgcagaagatacgagcgatggaactgttaat
gcagcagctcaagtaatatga
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integrated database retrieval system
