Cucurbita pepo subsp. pepo (vegetable marrow): 111792008
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Entry
111792008 CDS
T05351
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013
Nucleocytoplasmic transport
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111792008
03015 mRNA surveillance pathway
111792008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111792008
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111792008
mRNA cycle factors
P-body specific factors
111792008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
111792008
NCBI-ProteinID:
XP_023529202
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Position
LG01:complement(19167643..19180487)
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AA seq
1190 aa
AA seq
DB search
MDHHEDGSGVESQPKRDDEEMVARQEEIKKSFEAKMALRQSNLNPERPDSGFLRTLDSSI
RRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDARLRASDIQAAVQICSL
LHKRYKDFSPCLIQGLLKAFFPGKSGDELEADRNSKAMKKRSSLKLLLELFFVGVVEDSA
IFNNIIKDLTSVEHLRDRDTTLTNLTLLASFARQARILLGLPPTGQDHEEFFKSLNITAD
QKKFFRKAFHTYYDAAAELLQSEHTSLRQMEHENAKILNAKGELSDENVSSYEKLRKSYD
HLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPASGKDSSVLEAIWDDEDTRAFY
ECLPDLRAFVPAVLLGEAEPKANEQSAKPAENLAESEADQGHQTSIEDVEISTDGSLQDG
KINEKGKDKEEKDKEKNKDTDKEKGKEKDADRKIENEKEKLKNIEGTNLDALLQRLPGCV
SRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSVIL
LQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKIASAGLVFSCLKACLDDFTHHNI
DVACNLLESCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPER
SARVSKVRPPLHQYIRKLLFSDLDKSALENVLRQLRKLPWSECEQYLLKCFMKVHKGKYG
QIHLLASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYNYE
LVDSSVVFDTLYLMLVFGHGTSEQDVLDPPEDTFRIRMVITLLQTCGHYFDRGSSKRKLD
RFFIHFQKYILSKGGLPLDVEFDLQDLFAELQPNMTRYSSIEEVNAAFVELEEHERSVSS
DKSNTEKHLDAEKPMSRATSNTTSANGRDTVNGSRENGAAHGDGVDSDSDTGSGTIEAEG
RDDEESDLGNHEDGCDSDDDEDDEEAGGPASDEDDEVHVRQKVPEVDPREEANFDQELRA
VMQESMDQRRQEIRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEGLDEDAGGSKEVQ
VKVLVKRGNKQKTKKMYIPRDSALLQSTKQKEAAELEEKQDIKRLILEYNDREEEENNGL
GSQTMNWMQTGGNRVPTRGNNWESSGGRSGGSRHLHHRYPGSGVHYSRKK
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggaccatcatgaagatggctctggggttgaaagtcaacccaagagagatgatgaggaa
atggttgcccgtcaggaagaaattaaaaagtcatttgaggctaaaatggctcttcgtcaa
agtaatttgaatcctgagaggcctgactctggattccttagaactttggattctagtatt
agacgcaacacaacaattattaaaaagttaaagcaaataaatgaagaacaacgagaaggg
ctgatggatgaattgcgaaatgtaaatatgagtaaatttgttagtgaggctgttgctgct
atttgtgatgccaggcttagagcttctgatatacaagcagctgttcagatctgttcgctt
cttcacaaaaggtacaaagacttctcgccatgcttgattcaaggactcttgaaagcattc
tttcctggaaagtctggggatgagttggaggctgataggaactcgaaggccatgaaaaag
cgcagctctctcaaacttcttttagaacttttttttgttggagttgtagaagacagtgca
attttcaataatattattaaggatcttacaagtgttgaacatttgagggatcgagatact
accctaacaaatttgactctccttgctagctttgctcggcaagctagaatcctcttgggg
ctaccgcctactggtcaagatcatgaggagttttttaagagcctcaatattactgccgac
caaaagaaattcttcagaaaggcgtttcatacatattatgatgctgcagcagaattgctt
cagtctgaacatacttcacttcgccaaatggagcatgaaaatgcaaagatcttgaatgca
aaaggagaacttagtgatgaaaatgtctcttcatatgagaagttgcgaaaatcttatgac
catctatatcgaaatgtctcatccttagcagaagcacttgatatgcaacccccagtgatg
ccagaagatggtcacacaaccagggtttctgcaggagaagatgtttcatcacctgcttct
ggaaaggattcttctgtgctcgaagccatatgggatgacgaagacacccgggctttctat
gaatgcttaccagatctcagggcatttgttccagcggtactgttgggagaagcagagcct
aaagcaaacgagcaatctgcaaagccggcagaaaatctggctgaatctgaagcagaccaa
ggtcatcaaacatccatagaggacgtggagatttctacggatggttcgctacaggatgga
aaaatcaatgagaaaggaaaggacaaagaagaaaaggataaagaaaagaacaaggataca
gacaaggagaaggggaaagaaaaggacgcagatagaaagattgaaaatgaaaaagaaaag
cttaaaaatattgaaggaacaaatttggatgctttgttacagagactccctggttgtgtc
agccgtgaccttattgatcagttgacagtagagttctgttatttgaattccaaggctaac
cgaaagaagctcgtcagggctttgtttaatgtacctaggacatctttggaattgctgcca
tactactcacgcatggttgcaacgttgtcgacttgtatgaaggatgtatctgtcattctc
ctccagatgttagaggaggagttcaattttttattgaacaaaaaggaccaaatgaacatt
gaaacgaagattagaaatattaggtttattggagagctctgcaagttcaaaattgcttca
gctggccttgtttttagctgtttgaaggcatgtttagatgatttcactcaccacaacatt
gatgttgcttgtaatcttctcgagtcctgtggtcgttttctttatcggtctcctgaaact
acagtgcggatggctaacatgctggagatattgatgcgcttgaaaaatgtaaaaaatttg
gatcctcgacatagcaccctggtagagaatgcatactatctttgcaagcctccggagaga
tctgcacgggtgtcaaaagttcgtccaccattgcatcagtatattagaaagttgctcttc
tcagatctagacaagtctgcccttgaaaatgtgttgaggcaacttcggaagcttccatgg
agtgaatgtgagcaataccttttaaaatgttttatgaaagttcacaaagggaagtatggc
cagattcacttgcttgcttctttaacgtcgggtttgagccgatatcatgatgaattctcg
gttgctgttgttgacgaggtattggaagaaattaggcttgggctcgaagtaaatgattac
gggatgcagcaaaaacgcattgcccatatgcggtttctgggggaattgtacaactatgaa
cttgtagattcatctgttgtttttgataccctttatttgatgcttgtctttggccatggc
acatcagagcaagatgtattggatccacccgaggacactttccgcataaggatggttatc
actcttcttcaaacctgtggtcactacttcgatcgaggatcttcaaagaggaaacttgat
cgattttttatacacttccagaaatatattctcagcaaaggcgggcttccattggacgta
gagttcgacttacaggatttatttgcggaattacaaccaaacatgaccaggtactcgtcc
attgaagaggtaaatgctgcttttgtagaacttgaggagcacgaacgttctgtctcaagc
gacaagtccaataccgagaagcaccttgatgctgaaaagcctatgagcagagcaacttcc
aataccacctcagctaatggaagggacacggtgaatggctctagggaaaatggtgcagct
catggagacggtgttgatagtgacagtgatacaggaagtggtactattgaggcagaggga
cgtgacgatgaagagtcggacttggggaatcatgaggatggatgtgacagtgacgatgac
gaagatgatgaggaagctggtggacctgcttctgatgaggatgatgaggttcacgttaga
cagaaagtgcctgaggtagaccccagggaagaagccaattttgatcaggaactcagggct
gtaatgcaggagagcatggatcagcgtaggcaagagatacgtggtcgaccaacattgaat
atgatgataccaatgaatttgttcgagggatcgacgagggaccaccatggaaggggggct
gggggagagagcggggatgagggattggatgaggatgctgggggaagcaaagaggttcag
gtgaaagttcttgttaagcgtgggaacaagcagaaaacgaagaagatgtacatccctcgt
gattccgcacttctacagagcacgaaacagaaagaagcagcagagctagaagagaagcaa
gatattaagaggttaatcttagagtacaatgaccgagaagaggaagaaaataatggatta
ggctcccaaacaatgaactggatgcaaacagggggcaatagagtccctactcgaggaaac
aattgggagtcatctggcgggaggagcggtgggtcgcgtcatctgcatcatcggtatccc
ggcagtggcgtgcattacagtcgaaagaagtga
DBGET
integrated database retrieval system
