Cucurbita pepo subsp. pepo (vegetable marrow): 111797603
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Entry
111797603 CDS
T05351
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013
Nucleocytoplasmic transport
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111797603
03015 mRNA surveillance pathway
111797603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111797603
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111797603
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
111797603
NCBI-ProteinID:
XP_023536426
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Position
LG06:complement(3514226..3521035)
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AA seq
412 aa
AA seq
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MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR
SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE
GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT
RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP
IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP
RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR
PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaccaagcagaggccgtcgttcgccgccgtcgggttcgggatcctcctcacgt
tcccgctcgtactccggctctggttcccgctccagttcccgctcgcgttccaggtctgca
tctgtgtcccgctcccgctctcgttccaagtccatttcctcgtcttcgtctctgtctcga
agcggtacttctcgaagccgaagcccccctcctcaaagaaagagtccgaatgaaacagct
cggcggactcgcgcttcacctccaccagctaaacgaatttctccgccacccaggaaacca
tctcctgtacgcgagtcacttgttcttcacattgatgcactgagtaggaatgtccatgag
ggccatttaaaagaaatcttcagtaattttggtgaagtagtccatgttgagctggcaatg
gatcgcacagtcaaccttcctaaaggatatggatatgttgaattcaaaacaagacctgat
gctgaaaaagcccaattgcatatggatggtgcccaaattgatgggaatgttattcgaaca
agatttacattgcctcaaagacagaagatcccaacacctccaaggactgtagcaaccgct
ccaaagagagatggtcctaagcctgaaaatgttggtgctgatgctgagaagaatgacatg
aaaagacagagagaaccttcacctcgtcgaaagcctccttctcctagaagacgctcgcct
attgctcgacgaggtgggtctcctagaagacaacccgattctcctcgccgccgtccagag
tctcctccgcgtcgccgcttagaatctccccctagaaggaggcctgcatcacccatgaga
ggtggccgttctccatcgcctttggcaaggcgacatagatctcctccaaggccctctcca
agaagaattcgtgacagtcctgttcgaagacgttcaccaccccctcctaggcgccgtaca
ccgcctcgccgtgctcgtagtcctcccagaaggtctccagtagttcgtagacggagccgt
tcaccgattagaagaccagctcgatcacgttcccgatcatcttcaccgcggagaggtcgg
cctgcagctgctggtagacgtgggagatcatcgtcctactctgcatcacctagtccacgc
aaggtgcccaggagagtatctcgcagtccaagaaggcctttaagagggagaagcagcagc
aggagcagtagcagtagttctccaccccgcaagccataa
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