KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111800076
Entry
111800076         CDS       T05351                                 
Name
(RefSeq) replication factor C subunit 3-like
  KO
K10756  replication factor C subunit 3/5
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03030  DNA replication
cpep03410  Base excision repair
cpep03420  Nucleotide excision repair
cpep03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111800076
   03410 Base excision repair
    111800076
   03420 Nucleotide excision repair
    111800076
   03430 Mismatch repair
    111800076
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cpep03032]
    111800076
   03036 Chromosome and associated proteins [BR:cpep03036]
    111800076
   03400 DNA repair and recombination proteins [BR:cpep03400]
    111800076
DNA replication proteins [BR:cpep03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    111800076
  DNA Replication Termination Factors
   ELG1-RFC complex
    111800076
Chromosome and associated proteins [BR:cpep03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    111800076
DNA repair and recombination proteins [BR:cpep03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     111800076
  Check point factors
   HRAD17(Rad24)-RFC complex
    111800076
SSDB
Motif
Pfam: DNA_pol3_delta UBN_AB HYPK_UBA COMPASS-Shg1 DUF4011
Other DBs
NCBI-GeneID: 111800076
NCBI-ProteinID: XP_023539426
LinkDB
Position
LG08:2944940..2951568
AA seq 493 aa
MVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKETQSPLPCNHARCRGILLCEADQL
SNETLMYVKWAIERNKGCSKIFFCCSDVSKLLLLSSFCTHVHLSPPSKQEIVEVLEYIAK
QQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKK
IVEEQSPKHCVTWQSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKETQSPLPC
NHARCRGILLCEADQLSNETLMYVKWAIERNKGCSKIFFCCSDVSKLLLLSSFCTHVHLS
PPSKQEIVEVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDEN
KLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDE
ELQRRVESFYADYNKMEEKPFVTEKGYGEEAVIKELHDPMRKNVNHFLKIEEFIAKFMSC
YKGEANKKNYLPT
NT seq 1482 nt   +upstreamnt  +downstreamnt
atggtggggagcattgaagtaaaggtgaaggaatcatcccactgtgtggaagtcaatctc
tcacaaaccaaaggctttgagaaacaagtcattgaccagctcatcaaagaaactcaatcc
cctttgccatgtaatcatgccagatgtcgagggatattgttatgtgaagcagatcagcta
tcaaatgaaaccctaatgtacgtaaaatgggcaattgagaggaacaaagggtgcagcaaa
atcttcttctgttgctctgatgtctctaagcttcttcttcttagctctttctgcactcac
gttcatctctccccaccttcaaagcaagagatagtggaagttctggaatacatagcaaaa
caacaagaattcgacttgtcgcgtcgaatggcagagagaatcgccgacaattccaagaac
aacctccgacaagccattcgatctttggaggcttcgtggaaaaaaagtcgattgtttgaa
gaagatgagaataaattgttgacgggttgggaagatgatattgcagatgttgctaagaag
atcgtcgaggagcaaagcccaaaacactgtgtgacgtggcagagtgaaatggtggggagc
attgaagtaaaggtgaaggaatcatcccactgtgtggaagtcaatctctcacaaaccaaa
ggctttgagaaacaagtcattgaccagctcatcaaagaaactcaatcccctttgccatgt
aatcatgccagatgtcgagggatattgttatgtgaagcagatcagctatcaaatgaaacc
ctaatgtacgtaaaatgggcaattgagaggaacaaagggtgcagcaaaatcttcttctgt
tgctctgatgtctctaagcttcttcttcttagctctttctgcactcacgttcatctctcc
ccaccttcaaagcaagagatagtggaagttctggaatacatagcaaaacaacaagaattc
gacttgtcgcgtcgaatggcagagagaatcgccgacaattccaagaacaacctccgacaa
gccattcgatctttggaggcttcgtggaaaaaaagtcgattgtttgaagaagatgagaat
aaattgttgacgggttgggaagatgatattgcagatgttgctaagaagatcgtcgaggag
caaagcccaaaacagctgtatattgttcgtggaaagctaaaaaagcttattgaatacgat
gtctcccccaatttcatttttaagactctagtagacgaattaaagaagttcttggacgaa
gaattacagcgtcgagtcgaaagtttctatgccgattataacaaaatggaggaaaaacca
tttgtcactgaaaaaggctatggggaagaagcagtgatcaaagagctgcatgatcctatg
agaaagaacgttaaccacttcttgaagattgaagaattcatagcgaagttcatgagctgc
tataagggagaagcaaataagaaaaattatttgccgacatga

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