Cucurbita pepo subsp. pepo (vegetable marrow): 111811178
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Entry
111811178 CDS
T05351
Name
(RefSeq) probable pectate lyase 8 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep00040
Pentose and glucuronate interconversions
cpep01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111811178
Enzymes [BR:
cpep01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111811178
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
111811178
NCBI-ProteinID:
XP_023553696
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Position
LG15:complement(968318..974581)
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AA seq
470 aa
AA seq
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MAVTLRLQFSTASLMFFLLLNILFVQSSFAGDQRLQSFNSSSMADSFAGDQRLQSFNSSS
MADSFSGDQRLQSFNSSSMADRYVKNEHAVDNPEEIASMVDLSIRNSTERRNLGFFSCGT
GNPIDDCWRCDPHWQLRRKRLANCGIGFGRNAVGGRDGRYYVVSDPRDDDPVNPRPGTLR
HAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHG
LHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCSDGLIDAIMG
STAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVV
NNDYTHWVMYAIGGSANPTINSQGNRYLAPVNPFAKEVTKRVVTSNGVWRHWNWRSEGDL
MLNGAYFTPSGAGAGASYARASSLGAKSSSLVGSLTSNAGALSCRRGFRC
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcactcttagactacagttttcaaccgcttcattaatgttcttccttcttctc
aacatcctcttcgttcaatccagttttgctggagatcagcgattacagagctttaattct
tcatccatggcggacagttttgctggagatcagcgattgcagagctttaattcttcatcc
atggcggacagtttttctggagatcagagactgcagagcttcaattcttcatccatggcg
gaccggtatgttaagaatgagcatgccgttgataatccagaggaaattgcatcaatggtg
gatttgagcatacgcaacagcacagagaggaggaatttggggttcttctcttgtggaaca
ggaaacccaattgatgattgttggcgttgtgacccacattggcaactgcggcgaaagcgc
ctcgccaattgcggcattgggtttggtcgtaatgcagttggtggccgtgatgggcgttac
tacgtcgtctctgatccacgtgacgacgatcctgtcaatcccagaccaggcacccttcgc
catgctgtgattcaagacagaccattatggattgtgttcaaacgagacatggtgatcact
ttaaagcaagaactcatcatgaacagcttcaagacaattgatgggcgtggcgtcaatgtg
cacatcgcttatggtgcttgtattactatccaattcataaccaatgttattattcatggt
ttgcatattcatgactgcaagccaacggggaacgccatggttcgaagctcgcctagtcat
tatggatggaggacaatggctgatggtgatgggatttccatttttgggtcgagtcatatt
tggattgaccataattctctttcttcttgttctgatgggctcattgatgctatcatggga
tcaactgctatcacaatttctaacaattacttcacccaccacaatgaggtgatgctcttg
ggacatagtgactcttatgtaagggacaagcaaatgcaagtcaccattgcttataaccat
tttggtgaaggtctcatccaaagaatgccaaggtgtagacatgggtatttccatgtagta
aacaatgactacactcactgggtaatgtatgccattggtggaagtgctaatcccaccatt
aatagccagggcaaccgatatctcgcccccgtcaacccttttgccaaagaggtcacaaag
agagttgtcacatctaacggtgtatggaggcattggaattggagatcggagggagatctc
atgctaaatggagcctatttcactccatcaggggctggtgcaggagccagttatgcaaga
gcctcaagcttaggagccaaatcctcttccttggtgggctcgcttacttcaaatgcaggt
gccctttcttgtcgtaggggattccgttgttaa
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