KEGG   Chitinophaga pinensis: Cpin_6404Help
Entry
Cpin_6404         CDS       T00959                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cpi  Chitinophaga pinensis
Pathway
cpi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cpi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Cpin_6404
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cpi03400]
    Cpin_6404
Enzymes [BR:cpi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Cpin_6404
DNA repair and recombination proteins [BR:cpi03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Cpin_6404
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme RNA_ligase DNA_ligase_OB_2 GH3
Motif
Other DBs
NCBI-ProteinID: ACU63808
UniProt: C7PJP8
LinkDB All DBs
Position
8046645..8048585
Genome map
AA seq 646 aa AA seqDB search
MLATLVDHPVDTPGWLYEVKWDGYRAIALLNKGGIQLISRNNKSFDEKFYPVFHALEAWK
INAILDGEIVVLTPDGISRFADLQNWRSEADGELIYYVFDLLWLNGYDLTQLPLIQRREL
LESLFPAPDIIRLSTAFRDTSSAEFLSAAKSLGLEGIIAKKEDSIYHTGLRSRDWLKIKI
NKRHEVVIGGYTRNENSSKPFSSLLVGVFEKGKFQYTGKIGTGFTSAQQKEMLQAFKPLI
RKTSPFSTVPDINKPSRFRPNPPKATAVWLSPQLVCEVSYAEITADGVMRHPSFEGMRID
KTAKEVGKEEAMPVAKVVKEAAGAISQQMLTPVVGGDRKTLLNPSEATQVRKVSKHELKF
SNLNKVFWPEEKYTKRDMLNYYYQVAPYILPYLKDRPQSLNRFPNGIKGKSFYQKDVTGK
APDWIKTFPYHTNDGEDKNFMVPTDEASLLYMANLGAIEMNPWNSKISKPDYPDWCIIDL
DPTEKNTFEQVIRTAQVTKEILDSIKVPGYCKTSGSTGIHIYIPLNAKYTYEDCQLFGKW
IASQVHQQLPSFTSIERMTQNRKGKIYVDYLQNRPKATLAAPYSLRPKPGATVSMPLHWD
EVKKGLKMKDFNITNAIARISEMGDIFKPVLGKGIDMKKILRSIRP
NT seq 1941 nt NT seq  +upstreamnt  +downstreamnt
atgctggccacattggttgatcatcctgtggatacacccggctggctgtatgaagtaaaa
tgggatggctatcgcgcaattgccctgctgaacaaaggcggcattcaactgatctcccgt
aacaacaaatcattcgacgagaaattctaccccgtcttccatgcactggaagcctggaag
attaacgccatccttgacggtgaaatagtcgtgctgaccccagatggtatctcccgcttc
gctgatcttcagaactggcggagtgaggccgacggtgaactgatctactatgtattcgat
cttttgtggctgaatgggtacgatcttacacaacttcccctcattcagcgacgggagcta
ctggaaagcctgtttcctgcgcctgatatcatccggctcagcaccgccttcagagatacc
tcctcagcagaatttctttccgcggccaagtcactcggactggaaggcatcattgccaaa
aaagaagacagtatttatcatacaggtctccgtagccgggattggttaaagattaaaatc
aataaacgacatgaagtcgtcattggcggttatacgcgtaatgaaaactcttccaaacca
tttagctctttgctcgtaggtgtatttgaaaagggcaagtttcagtatacgggaaagata
ggcaccggctttaccagcgcccaacaaaaggaaatgctgcaggcattcaaacccctgatc
agaaaaacatctcctttcagtactgtacctgatatcaacaaaccttcccgcttccgtccg
aacccgccaaaggcaacagccgtctggctaagtcctcaactggtatgtgaagtgagttat
gccgaaatcacggctgatggtgtcatgcgtcacccctctttcgaaggtatgcgtatagac
aagacggcaaaagaagtgggaaaagaagaagccatgcctgtcgccaaggttgtaaaagaa
gcggctggcgctatctcgcaacaaatgctgacacctgttgttggtggtgaccgcaaaaca
ctattgaacccctctgaagccactcaggtacgaaaagtcagcaaacatgaactgaaattc
tccaatcttaataaagtcttctggccggaagaaaagtataccaaacgggatatgctgaat
tactactatcaggtagcgccttacatattgccttacctgaaagaccggccacaatcgctt
aacagatttccaaacggtattaaaggcaaaagcttctatcagaaagatgtaacgggtaaa
gcgcctgactggatcaaaaccttcccctatcataccaatgatggagaagacaaaaacttt
atggtacccactgatgaagccagtctgctctacatggccaatctgggtgctatcgaaatg
aatccctggaacagtaagatcagtaaacctgattatcctgattggtgtattattgatctg
gatccaacagaaaagaatacctttgagcaggtaatcagaaccgcacaggttacaaaagag
atattagacagcattaaagttccaggctattgcaaaacatccggctctaccggcatacat
atctacattcctttaaacgcaaaatatacatacgaagattgtcagttgttcggcaaatgg
attgcctcccaggtacatcagcaacttccttcttttacaagtattgaacgcatgacgcag
aacagaaagggcaaaatatatgttgattatctacagaacaggccaaaggctacgcttgca
gccccttactccctgcgcccaaaaccaggtgcaacggtctccatgccgctacattgggac
gaagtaaagaagggacttaaaatgaaagacttcaatattaccaacgccatcgcccgtatc
agcgaaatgggggacatctttaaaccggtacttggcaaagggattgatatgaaaaaaata
ctacggtctatacggccgtaa

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