KEGG   Chrysemys picta (western painted turtle): 101932281Help
Entry
101932281         CDS       T04662                                 

Gene name
HDAC6
Definition
(RefSeq) histone deacetylase 6
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
cpic  Chrysemys picta (western painted turtle)
Brite
KEGG Orthology (KO) [BR:cpic00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatase and associated proteins [BR:cpic01009]
    101932281 (HDAC6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA Biogenesis [BR:cpic03019]
    101932281 (HDAC6)
   04131 Membrane trafficking [BR:cpic04131]
    101932281 (HDAC6)
   03036 Chromosome and associated proteins [BR:cpic03036]
    101932281 (HDAC6)
Enzymes [BR:cpic01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     101932281 (HDAC6)
Protein phosphatases and associated proteins [BR:cpic01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     101932281 (HDAC6)
Messenger RNA biogenesis [BR:cpic03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     101932281 (HDAC6)
Membrane trafficking [BR:cpic04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    101932281 (HDAC6)
Chromosome and associated proteins [BR:cpic03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     101932281 (HDAC6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP
Motif
Other DBs
NCBI-GeneID: 101932281
NCBI-ProteinID: XP_008173980
LinkDB All DBs
Position
Un
AA seq 839 aa AA seqDB search
MNKEAEELESGLQRLDDAKLQPPLGQGSRRTAASPRWASRTCAVLCAAVPQLPHLRSGCI
SASSEPSASPVCLHSRPPGHHAHRDKMDGYCMFNHLAIGARYARQKLGVERVLIVDWDVH
HGQGTQFLFEEDPSVLYFSVHRYEQGRFWPHLPASDSPAVGQGRGEGFNINVPWNAVGMR
DGDYLAAFLHVLLPVAFEFQPQLVLVAAGFDSVLGDPKGEMAASAACFAHLTHLLMALAG
GKVLLSLEGGYNLSSLAEGVCAALRTLLGDPCPRLEPPVAPCRSALSSVSRTLAIHEKYW
RSLRRGEADTPPRRCGRGASPHDPPRPPLAYVQTVKATAGMKPRELHRQGDQYNSIYICA
SSYECARLAAGSAFNAVRAVLEGEVQNAVAIVRPPGHHAESDTACGFCFFNSVALAARFA
QRLAGRPMKVMILDWDVHHGNGTQHMFEEDPSVLYVSLHRYDHGTFFPTSEDADADQVGK
GPGRGFTLNVPWNGPRMGDAEYLAAFHRLVLPVAYQFAPELVLVSAGFDAARGDPLGGYL
VSPEGYAHMTHLLLGLAGGRVVLVLEGGYNLVSISESMTMCTRTLLGDPLPELGRLQAPH
PSALHSLARASAEHRRYWACLRLDVPIREDSRPRSGQPGPIREDSPPEDPSGGSESPPAS
EGSDNDILRLGAQLSPDSALLGGASPGGEEPPASEVSEDPPSLLDEAAALLPSPSISLGV
EFADTGTLYAVTPLPWCPHLDSLQPLPPAGLDVLAPCEECGSQAENWVCLDCYRVLCGRY
VNQHMLAHGSVSGHPLVLSYADLSVWCYTCQSYVHHPTLLPAKALAHRMKFGEDPATGL
NT seq 2520 nt NT seq  +upstreamnt  +downstreamnt
atgaacaaagaggcagaggagctggaatcggggctgcagcgcctggacgacgccaagctg
cagccacctctggggcagggcagccggagaacagctgcatctccgcgctgggcgagccgt
acctgtgcggtgttatgtgcggctgttccccagctgccccacctcagaagtggctgcatc
tcagcatcaagcgagccttccgctagccctgtttgtctccattccaggccgccaggacac
cacgcccaccgagataagatggatggttactgcatgttcaaccacctggccatcggggcc
agatacgcccggcaaaaactgggagtggaacgagtcctgatcgtcgactgggacgttcac
catgggcagggcacccagttcctcttcgaggaggatcccagcgttctctatttctccgtc
catcgctacgagcaggggaggttctggccccaccttccggcttccgacagccccgccgtg
gggcagggccgcggagagggattcaacattaacgtgccgtggaacgcggtgggaatgagg
gacggggattatctcgctgcctttttacacgtcttactgccagtggcctttgagttccaa
ccccagctggttctggtggccgccgggttcgactctgtgctcggggaccccaagggcgag
atggctgcgtcggccgcgtgcttcgctcacctgactcatctgctcatggccctggcggga
ggcaaggtgctgctgtctttggagggtggctacaatctgagctccctggccgagggggtc
tgtgcggccctgaggaccctcctgggggacccctgtccccggctggagccgcctgttgcc
ccctgtcgcagcgctctgagctccgtgtccaggacgctcgcgatccacgagaaatactgg
cggagcctgcggagaggggaggccgacaccccccccagaagatgtggaagaggagccagc
ccccacgacccccccagaccccccctggcgtacgtgcagacggtgaaggccacagctggc
atgaagccgcgggagctgcaccgccagggggaccagtacaactccatctacatctgcgcc
agctcctacgagtgcgcccggctggcagccggctctgccttcaacgccgtgcgagccgtg
ctggagggcgaggtgcagaacgccgtggccattgtccggccccccgggcatcacgccgag
tccgacacagcctgtggcttctgcttcttcaattcggttgccctggcagctcggttcgcg
cagcgcctggcgggacggcccatgaaggtgatgatcctggactgggatgttcaccatggc
aacggtacccagcacatgtttgaggaagatccgagcgtgctgtacgtctctctgcaccgt
tacgaccacggcaccttcttccccacctctgaggacgctgacgccgaccaggtggggaag
gggccgggccgtggcttcaccctcaacgtgccctggaacggcccccgcatgggcgacgcc
gagtacctggccgccttccaccgcctggtgctgcccgtcgcctaccagttcgctccagag
ctggttctggtgtcggctgggtttgacgccgcccgtggggacccgctggggggctacctg
gtgagccccgagggctacgcccacatgacccacctcctgctggggctggcaggaggccgg
gtcgtgctggtactggagggaggctacaacttggtgtcgatctccgagtccatgaccatg
tgcacccggaccctgctgggggacccgctgcccgagctggggcgcctgcaagcgccacac
cccagcgccctgcactcgctggcccgggcgagcgccgagcaccgcagatactgggcctgc
ctgcgactggacgtgccgatccgggaggactcaaggccccgatccgggcagccgggcccc
atccgggaggactccccaccagaggatccctcaggggggtccgagagcccccccgcctct
gagggctccgacaatgacatcctgaggctgggagcccagctgagccctgactccgccctg
ctgggcggggcttcccctggaggggaggagcctccagcttcagaggtgtcagaggacccc
ccgagcctcctggacgaagcagctgccctgcttccctccccctccatcagcctgggggtg
gagttcgcagacacggggacgctctacgccgtgacccctctgccttggtgtccccacctg
gactcgctccagccccttcccccggccgggctggacgtgctggcgccgtgtgaggagtgc
ggcagccaggccgagaactgggtctgcctggactgttaccgggtgctctgcgggcgttac
gtcaatcagcacatgctggctcacggctcggtttccggccaccccctggtgctgagttac
gccgacctgtcggtctggtgctacacctgtcaatcatacgtccatcacccgaccctgctg
ccagccaaggccctggctcaccgcatgaagttcggggaggacccggccactgggctctga

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