Chryseobacterium piperi: CJF12_14310
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Entry
CJF12_14310 CDS
T05071
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cpip
Chryseobacterium piperi
Pathway
cpip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJF12_14310 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpip03019
]
CJF12_14310 (rnr)
03016 Transfer RNA biogenesis [BR:
cpip03016
]
CJF12_14310 (rnr)
Enzymes [BR:
cpip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CJF12_14310 (rnr)
Messenger RNA biogenesis [BR:
cpip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CJF12_14310 (rnr)
Transfer RNA biogenesis [BR:
cpip03016
]
Prokaryotic type
tRNA degradation factors
CJF12_14310 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
ASW75345
UniProt:
A0A086BF68
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All DBs
Position
3245371..3247518
Genome browser
AA seq
715 aa
AA seq
DB search
MKKRRYISQKNDHKLMEIGRLILRFMNENSSKIYNYKQIADGIDYKNPRQRELVIQALHK
LQSSEKIKETDKGKYIVNLKIAGTLTGTIDFNQSGNAYVTVEGMKDDIFIHSKNVKDALQ
GDKVLIVTYTYKGKKLEGSVLEVIERGRTEFVGTLQVVPHKEFGFVVCDKKSINTDIFIP
KGKFGGAEDGDKVVVKMTEWKPGDKNPEGEIIQVLGAPGEHETEIHSILAEYGLPYQFPE
EVERDADKIDRRIIDEEVAKRWDMRDITTFTIDPKDAKDFDDALSIRKLDNGNWEIGVHI
ADVSHYVIPGTILDDEAYQRATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFEL
NDQAEVKKQWFGRTVIHSDRRFTYEEAQERLETKEGDYAEEILVLDSLAKIMRAERIRKG
AITFDRSEVRFNLDENSQPIGVYFKISKDSNHLIEEFMLLANRKVSEFVSLSKGQPTNNT
FIYRVHDDPDPAKLEALRDFVSTFGYKMDLANTKKVAESLNRLLSDVKGKGEENMIETLA
MRSMSKAVYSTDPIGHYGLGFEYYSHFTSPIRRYPDLIAHRLLQHYLDGGKSPNREEVEE
KSKHCSSMERLAADAERDSIKFMQVKFMEKHLGETFMGVISGVAEFGFWVEIPENGAEGL
IKLRDLVDDSYVYDKSTHAVYGSRTGKKYQLGDEVQIKVVKANLIQKQLDFKIVD
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaagaagatatataagtcaaaaaaatgaccataaactcatggagatcggaaga
ttgatcctacgttttatgaatgaaaactcatccaagatctataattataagcagatcgct
gatggaatagattacaaaaatcccagacagagggaacttgttattcaggccctgcataaa
ttgcagtcttcagaaaagattaaagaaacggataaaggaaaatatattgtcaatcttaag
atcgcgggaactttaacagggactatagattttaaccaatcaggaaatgcctatgtaacc
gttgaaggaatgaaagatgatattttcattcactctaaaaatgttaaagatgcccttcag
ggagataaggtattaatagttacctatacttataaaggaaagaaactggaaggctccgtt
ttggaagttatagaaagaggaagaaccgaatttgtaggaactttacaagtggttccccat
aaagaattcggatttgttgtttgtgataaaaaatcgattaataccgatatttttattccc
aaaggtaaattcggaggcgctgaagatggtgataaagttgtcgttaaaatgacggaatgg
aaaccgggagataaaaatcctgaaggtgaaatcattcaggttttgggagctcctggagag
cacgaaacagagattcactctatccttgcagaatacgggttaccgtatcaattccctgaa
gaagtagaaagagatgccgataaaatcgacagaagaattatagatgaggaagttgcaaaa
cgttgggatatgcgtgatattacgacattcacaattgaccctaaagatgcaaaagacttt
gatgatgctttgtctatcagaaaattagacaatggaaactgggaaataggagttcatatt
gcagatgtttcacattatgtaattccaggaactatcctggatgatgaagcctatcagaga
gcaacttctgtttaccttgtagacagagtggttcctatgttacccgaagttttaagtaat
gatgtatgctcgcttcgtcccaacgaagataaatatactttttcagctgttttcgaattg
aatgatcaggctgaagttaaaaaacaatggtttggaagaacagtaattcattctgacaga
agatttacttatgaagaggcacaggaaagactcgaaacaaaagaaggagattatgctgag
gagattttagttcttgacagcttggcaaaaatcatgcgtgcagaacgtatccgtaaagga
gcaatcacgtttgacagaagtgaagtacgatttaatctggatgaaaacagtcagccaatt
ggtgtttactttaagataagtaaagattcaaaccatttgatcgaagagtttatgctttta
gccaacaggaaagtgtcggaatttgtctcactgtcaaaaggacaacctaccaataataca
tttatttacagggttcatgatgatccggatcctgctaaattagaagcattaagagatttc
gtttctacattcggatataagatggatcttgccaatacgaaaaaagtagctgaatcttta
aacagattattgagtgatgtaaaaggaaaaggagaagaaaatatgatcgagaccttagcc
atgagaagtatgagtaaagctgtttactctaccgatcctattggacattacggtttggga
tttgagtattattcgcacttcacctctcctattcgtcgttatcccgatttgattgcacat
cgtttgttacaacattatctggacggaggaaaatctcctaacagagaagaagtagaagaa
aaatcaaaacattgcagctcaatggaaagattggcagctgatgcagaaagagattcgatc
aaattcatgcaggtgaaattcatggaaaaacaccttggagaaacctttatgggagtgatt
tcaggagtggcggaattcggattttgggttgagattcctgaaaacggtgctgaaggacta
atcaagcttagagacttggtagacgattcatatgtttatgataagtcgacgcatgctgtt
tatggttcaagaactggtaaaaaatatcagttaggtgatgaagttcagatcaaagtggtt
aaagccaatttaattcagaagcaactagattttaagattgttgattaa
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