Collimonas pratensis: CPter91_0475
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Entry
CPter91_0475 CDS
T04306
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cpra
Collimonas pratensis
Pathway
cpra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CPter91_0475 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpra03021
]
CPter91_0475 (rpoC)
03400 DNA repair and recombination proteins [BR:
cpra03400
]
CPter91_0475 (rpoC)
Enzymes [BR:
cpra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CPter91_0475 (rpoC)
Transcription machinery [BR:
cpra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CPter91_0475 (rpoC)
DNA repair and recombination proteins [BR:
cpra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CPter91_0475 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AMP02870
UniProt:
A0A127PYF9
LinkDB
All DBs
Position
497077..501315
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVQQNETFDSIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVITDPGMTPLKRCQIMSEDDYAAKYEEYGDDFTAFM
GAEGIRELLRAIDIDRDAETLRQELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFHKLEVMGIASTIKAAKKEVENQTSVVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREQINGKGEGMMFPDVSEAIRAYDNK
EVELTTRVTVRITEYPKDAVTGEFVKTIKRYETTVGRAILSEILPKGLPFTVLNRALKKK
EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATIIATAEQ
EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDDVGKAMMEQLKVEDVVRRDGTKGTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGASMKAMVEGGEVIEALRDRI
LGRVAANDIVNPETQGTLYEAGTLLDEDAVEEIERLGIDEVKVRTPLTCDTRYGLCAQCY
GRDLGRGTLVNNGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRSAVASSVEAKSNGTVR
FTATMRYVTNGKGELIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGLTIKAGTALA
TWDPLTRPIITEYTGTVRFENVEEGSTVARQIDEVTGLSTLVVIDAKRRGSVTKTVRPQV
KLLNEQGEEVKIAGTEHAVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQIVDAGDASYITGEQVERSELLDENDRVIAAGKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDTLRGLKENVIVGRLIPAGTGLAFHRARKEKDSWEAEE
RTALLQSEQAARLAAAEARAAEELGAQESGEA
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatttattcaagcaagttcagcaaaacgaaacgttcgactcgatc
aagatcggtctggcgtcgcctgaaaaaattcgttcgtggtcttatggcgaagtaaaaaag
cctgaaaccatcaactaccgtaccttcaagccagagcgcgacggtctgttctgcgccaag
atttttggcccgatcaaagactacgaatgcctctgcggcaagtacaagcgtctgaagcac
cgcggtgtcatctgcgaaaagtgcggcgttgaagtcacgctggccaaggtgcgccgtgag
cgcatgggccatatcgagctggcctcgccgactgcgcacatctggttcctgaaatcgctg
ccgtcgcgtctgggcatggtcctcgacatgaccctgcgggatatcgaacgcgtcttgtat
tttgaagcctacgtcatcaccgatccaggcatgacgccgctgaagcgttgccagatcatg
tcggaagacgactacgccgccaagtacgaagaatacggcgacgatttcaccgcattcatg
ggcgccgaaggcatccgtgagttgctgcgcgcgatcgatatcgaccgcgatgcggaaacc
ctgcgtcaggaattgaaagagtcgaagtccgaagccaagatcaagaaatacgccaagcgc
ctgaaggtgctggaagcgttccagcgttcgggcatcaagccggactggatgatcatggaa
gtgttgccagtgctgccgcctgagttgcgtccgctggtgccgctggatggcggccgtttc
gctacctccgacctgaacgacctgtatcgccgcgtcatcaaccgtaacaaccgtctgaag
cgcctgatggaattgcgcgctccggaaatcatcacccgcaacgaaaagcggatgctgcag
gaagcggttgactcgctgctggacaacggccgtcgcggcaaggcaatgactggcgccaac
aagcgtccgctgaaatccctggcagaaatgatcaagggtaagggcggccgtttccgtcag
aacttgctgggtaagcgcgtcgactattccggccgttcagtgatcgtggtgggtccacag
ctgaaactgcatcagtgcggcttgccgaaactgatggcattggaactgttcaagccattc
attttccacaagctggaagtgatgggcattgccagcaccatcaaggcagccaagaaggaa
gttgaaaaccagacttccgtggtgtgggacatcctggaagacgtgatccgcgaacatccg
gtcatgttgaaccgtgcgcctacattgcaccgtctgggtatccaggcatttgagccggtc
ctgatcgaaggcaaggctatccaattgcacccgctggtctgcgccgcattcaacgccgac
tttgacggtgaccaaatggcggtccacgtaccactgtcgatcgaagcacagatggaagcg
cgcacgttgatgctggcttccaacaacatcctgttcccatcgaacggcgaaccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtactacgccacccgtgagcaaatcaacggc
aagggcgaaggcatgatgttccctgacgtgtcggaagccatccgtgcttacgacaacaag
gaagtcgagctgacgacccgcgttaccgtgcgtatcaccgagtatccgaaggatgccgtc
acaggtgaattcgtcaagaccatcaagcgttacgaaacgactgtcggccgtgcgatcctg
tcggaaatcctgcctaagggcctgccattcaccgtgctgaaccgcgcgctgaagaagaag
gaaatctcgaagctgatcaacacatcgttccgtaagtgcggcctgcgcgcgacggtggtg
tttgctgaccagctgatgcagtccggtttccgcctggcgacccgtgccggtatctcgatc
tgcgtggacgacatgctggtaccgccacaaaaggccaccatcatcgcgactgcagaacaa
gaagtgaagcagatcgaacagcagtactcgtccggtctggtgactgcaggcgaacgctac
aacaaggttgtggacatctggggcaaggccggcgacgacgtcggcaaggccatgatggaa
cagctaaaggtagaagacgtggttcgccgcgacggcaccaagggcactcaggaatcgttc
aacgcgatttacatgatggccgactccggtgcgcgcggttccgcagcacagatccgtcag
ctggccggtatgcgtggcctgatggcgaaaccggatggttcgattatcgaaacgccgatc
accgcgaacttccgcgaaggtctgaacgttttgcagtactttatttcgacccacggtgca
cgtaaaggtctggccgatacggcgctgaagacagcgaactcgggttacctgacgcgtcgt
ctggtcgatgtgacgcaggatctggtcgtgatcgaagatgattgcggcacttccaacggc
gcctcgatgaaggcgatggttgaaggcggtgaagtgatcgaagcgctgcgcgaccgtatc
ctcggccgtgttgctgccaacgatatcgtcaatccggaaacccagggcacgctgtacgaa
gccggcaccttgctggacgaagatgcagtggaagaaatcgaacgcctcggcatcgatgaa
gtcaaggtccgcacaccgctgacttgcgacacacgctacggcctgtgcgcgcaatgttac
ggtcgcgacctgggccgcggcacgctggtcaacaacggtgaagcagtcggtgtggttgct
gcgcagtcgatcggtgagccgggtacccagctgaccatgcgtactttccacatcggtggt
gcggcatcgcgttcggcagtggcatccagtgtggaagccaagtccaacggtacggtccgc
ttcacggcgaccatgcgttacgtgactaacggcaagggcgaactgatcgtgatttcccgt
tccggcgaagtcctgatcaccgacgaccacggccgtgagcgcgaacgtcataaagtacct
tacggtgcgactctgatcgtcaaggatggcttgaccatcaaggccggtacagcactggcg
acatgggatccgctgacccgtccgatcattaccgagtacaccggtacggtccgtttcgag
aacgtcgaagaaggttcgaccgttgcccgtcagatcgatgaagtgaccggtctgtcgaca
ttggtggttatcgatgcgaagcgtcgcgggtcggttaccaagactgtgcgtccacaggtc
aagctgttgaacgagcaaggcgaagaagtcaagatcgccggtaccgaacacgctgtgacg
atcggtttccaggtgggcgcgctgattaccgtgaaagacggtcagcaagtgcacgttggt
gaagtgctggcgcgtatcccgactgaatcgcaaaagacacgcgatattaccgggggtctg
ccgcgcgttgccgagttgttcgaagcacgttcgccgaaggatgccggtatgctggctgaa
gtcacaggtactgtggccttcggtaaggaaaccaagggtaagcaacgtctggaaatcaca
gacatggacggcaacaagcacgagttcctgattaccaaggacaagcaagtgctggtacat
gacggccaagtcgtgaacaagggtgaaatgattgtcgacggcccagccgatccgcaagac
atcctgcgcctgttgggtatcgaagcgctggcacgctacatcgtcgacgaagttcaggac
gtgtatcgcttgcaaggcgtgaagatcaacgacaagcacatcgaagtgatcgtgcgccag
atgttgcgccgcgttcagatcgttgatgccggcgatgcttcttacatcactggcgagcag
gtcgagcgttcggaactgctggacgaaaacgaccgcgtgattgcagcgggcaagatccct
gcaacttacgaaaacgtgttgctgggtattaccaaggcatcgttgtcgaccgattcgttc
atctcggctgcatcgttccaggaaactacccgcgtgttgaccgaagccgccatcatgggc
aagaaagacacgctgcgcggtttgaaggaaaacgtcatcgtcggccgcctgattccagct
ggcaccggtctcgcgttccaccgtgcacgcaaggaaaaagacagctgggaagcggaagag
cgcacagcactgttgcaatccgagcaggcagcacgtctggcagctgcagaagcacgcgct
gctgaagaactgggcgcgcaggaaagcggcgaagcttaa
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integrated database retrieval system
