KEGG   Collimonas pratensis: CPter91_1254Help
Entry
CPter91_1254      CDS       T04306                                 

Definition
(GenBank) ATP dependent DNA ligase domain protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cpra  Collimonas pratensis
Pathway
cpra03030  DNA replication
cpra03410  Base excision repair
cpra03420  Nucleotide excision repair
cpra03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cpra00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CPter91_1254
   03410 Base excision repair
    CPter91_1254
   03420 Nucleotide excision repair
    CPter91_1254
   03430 Mismatch repair
    CPter91_1254
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cpra03032]
    CPter91_1254
   03400 DNA repair and recombination proteins [BR:cpra03400]
    CPter91_1254
Enzymes [BR:cpra01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CPter91_1254
    6.5.1.6  DNA ligase (ATP or NAD+)
     CPter91_1254
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CPter91_1254
DNA replication proteins [BR:cpra03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CPter91_1254
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CPter91_1254
DNA repair and recombination proteins [BR:cpra03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CPter91_1254
   NER (nucleotide excision repair)
    Other NER factors
     CPter91_1254
   MMR (mismatch exicision repair)
    Other MMR factors
     CPter91_1254
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AMP03637
UniProt: A0A127Q0T1
LinkDB All DBs
Position
complement(1295218..1296099)
Genome map
AA seq 293 aa AA seqDB search
MPTPSSARPRRPRIASLLSALLLGLSLWLPAAAQSTTPAPPMMLANVYHPGIALADYWVS
EKLDGVRGYWDGKQLLTRGGQRINAPPWFTAGWPKVALDGELWAGRGQFNHAVSTVRREA
PDDAAWRRMRFMVFDLPAHPGTFDQRLPALQSTLAKLAVPWVQPVEQVKLGDDAALQGLL
QQTVRQGGEGLMLHRGASLYRAQRSDDLLKVKTHEDAEAKVIGHLPGKGKYQGMLGALLV
ETPDGLRFKLGSGFSDAQRRQPPALGSVVTYRFRGLNESGIPRFASFMRIYQQ
NT seq 882 nt NT seq  +upstreamnt  +downstreamnt
atgcccacgccatcatctgcccgaccacgccgaccacgcattgccagcctgctgagcgcc
ctgttgctcggcttatctctttggctgcccgccgctgcccagtccaccacgccggcaccg
ccgatgatgctggcaaatgtctaccatcccggcatcgcgctggccgattattgggttagc
gagaagctggatggtgtgcgtggttactgggacggcaagcaattgctgacccgcggcggc
cagcggatcaacgccccgccctggttcactgcgggctggccaaaggtggcgctggatggc
gaactgtgggctggccgaggccagttcaaccatgcggtgtcgaccgtgcgccgcgaggca
cccgacgatgcagcctggcgccgcatgcgcttcatggtgttcgacctgcctgcccacccc
ggcacgttcgaccagcgcctgcctgcgctgcaaagcacgctcgccaagcttgccgtacct
tgggtacagccggtggaacaggtcaaactgggtgacgacgcagccttgcaaggcttgctg
caacagaccgtcaggcaaggcggcgaaggcttgatgctgcaccggggcgcttcgctttac
cgcgcgcagcgcagtgacgacctgctgaaagtgaaaacccatgaggatgccgaagccaag
gtcatcggccatctgcccggcaaaggcaaataccagggcatgctgggcgcactcttggtg
gaaacgccagatggcttacgtttcaagctgggcagcggcttcagcgacgcacaacggcgc
cagccgcccgccttgggcagcgtggtgacataccgcttccgcggcttgaatgagagcggc
ataccgaggttcgccagcttcatgcggatctatcagcaatag

DBGET integrated database retrieval system