Colwellia psychrerythraea: CPS_2767
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Entry
CPS_2767 CDS
T00258
Symbol
recD
Name
(RefSeq) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cps
Colwellia psychrerythraea
Pathway
cps03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CPS_2767 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cps03400
]
CPS_2767 (recD)
Enzymes [BR:
cps01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CPS_2767 (recD)
DNA repair and recombination proteins [BR:
cps03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CPS_2767 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
SH3_13
AAA_11
Viral_helicase1
UvrD_C
Helicase_RecD
UvrD-helicase
SLFN-g3_helicase
AAA_12
AAA_22
AAA_24
RecD_N
nSTAND3
Microtub_bd
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AAZ24072
UniProt:
Q480P0
LinkDB
All DBs
Position
complement(2880929..2883238)
Genome browser
AA seq
769 aa
AA seq
DB search
MVDNSMNKPVYSRFSQVKDTIQGVEAIDYFFAKEMLSPLTALTNNQSLTEDTAGSGSDTT
ANISCQHNLYHLFLALSASLRAGHSCLPLSEVADQHWGKGFTSTKKKNNVNKDNQQDSEG
LTEEHTQELSHAGFVFAPLTQLQVMLSELNILASDQQLLVLQHDKLYLRRYFQFESDLGE
AIHARLLQQCQYDNDSIGQCIGKLFPNDLAQVEAQDVESLEIDWQKVAVANAINKNFSVI
AGGPGTGKTYTVTKLLAALVMLEQMGLAKTGKQQAEVAQQKQQGTAVLNIALVAPTGKAA
QRLSESIVNAISGFKNLIDDKVLAEIPTQAQTLHRLLGVLPNSPNFRHHQDNRLPYDIVL
IDEVSMVDLPLMTRVFRALKDTAKVILLGDADQLPSVAAGSVLADIAPRPHGGFSLENEQ
YLAQVCQLLPAQVSDYFSAHRLPSQSAEQSSFDYLTFLVKSRRFDGKGGIGLIANSVIKG
DVKRSWRLLNDSLSQSTQEGFIQGDYLQAGYLQGDKSQKQQPSQLTLAQGDLTTWLAPLV
KQYYQPIEHCSTVSDAFVLLSQFRVLCATRQGDYGVERLNEVIKSYLGKNNAPYQQHQQT
LYHGQPIMINENDYRLGLYNGDIGIIWKVIDQAGKTHLMACFEDTTLESKSAESKVDEST
ETSQLTIRQILPSRLPQFESVYAMTIHKTQGSEFSHVAMVISATQSEQQTLQQGKQQGGS
RLLSRELLYTGITRAKKQLTIAANQRVWQQGVTAQVKRHSGLYLDFDKV
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggttgataatagtatgaataagccagtatacagccgttttagccaagtaaaagacact
atccaaggtgttgaagcgattgattatttctttgctaaagaaatgctcagtccgttaaca
gctctaacaaataatcaatcactcacagaagatacagcgggatcaggatctgatacaacg
gctaatataagttgccaacataacttataccatttgttcttagccttaagtgccagccta
cgcgcagggcacagttgtttacctttgagtgaggttgcagatcaacattggggcaaaggt
tttacctccaccaagaaaaaaaataatgtaaataaagataatcagcaagatagtgaagga
cttactgaggaacacactcaagagctcagtcacgctggttttgtttttgcgccgttaacg
caactgcaagtgatgttaagcgagctaaatattttagcatctgatcaacaattattggtt
cttcaacatgataaattatatttgcgccgttattttcagtttgaaagtgatttgggcgaa
gccattcatgcgcggttactgcagcagtgccagtatgataatgacagcattggtcagtgt
ataggcaagttattccctaatgatttagctcaagtagaagcgcaagacgtcgaatcatta
gaaattgattggcaaaaagtcgcggtagcgaatgccattaataaaaactttagtgttatt
gctggcggcccaggtacaggtaaaacctataccgttactaaattattagccgctttggtt
atgttagaacaaatggggttagcaaaaacaggaaaacagcaggcagaagtagcacagcaa
aaacagcagggcacagctgttcttaatattgcattggttgcgcctacggggaaagcagca
caacgcttgtcagagtctattgtgaatgcaatctctggttttaaaaatttgattgatgac
aaagtgctcgctgaaattcccacgcaggcacaaacacttcatcgcttattaggagtattg
ccaaactcaccaaactttaggcaccaccaagataatcgcttaccctatgatattgtgctt
attgacgaagtgtctatggtcgatttacctttaatgacccgagtttttcgtgcgttaaaa
gacacggctaaagtcatcttattaggtgatgctgaccaactaccctcggtagctgccggt
agcgtgttagccgacatagcgcctcgtccacatggtggatttagtcttgagaatgaacaa
tatttagctcaagtttgtcaacttttgccagctcaagttagcgattatttttcagcgcat
agactacctagtcaaagcgctgaacaaagcagcttcgattacttaaccttcttagttaaa
tcaagacggtttgacgggaaaggtggcattggtctgattgctaatagcgttataaaaggg
gatgttaaacgtagttggcgactgcttaacgattctcttagtcagagcactcaagaaggt
ttcattcaaggagactatcttcaagcaggctatcttcaaggagataaaagccaaaagcag
caaccgagccagttaacacttgcccaaggggatcttactacttggttagcaccgctagtg
aagcaatattatcaaccgattgagcattgttctactgtgagcgatgcttttgtattatta
tcacaatttagagtcttatgtgctactagacaaggtgattatggggttgagcgacttaat
gaagtgatcaaaagctatttaggtaaaaacaacgcaccttatcagcagcatcagcaaacg
ctttatcatggtcagcctattatgataaatgagaatgactaccgcttaggtttatataat
ggtgatataggtattatctggaaagtgatcgaccaagcaggtaaaacacatcttatggcg
tgttttgaagataccactcttgaaagtaagagtgcagaaagtaaagtggatgagagtaca
gaaacatcacagctaacaatcagacagatattaccttcacgtttgcctcaatttgaaagt
gtttatgccatgaccatccacaaaacccaaggtagtgagttctctcatgttgctatggtt
atttcagctacacaatctgagcagcagaccttacaacaaggtaagcaacaaggtggtagt
aggttattatctagagaattactttataccggtattactcgggcgaaaaagcagttaacc
attgctgctaatcaacgggtctggcaacaaggggttacggcacaagttaaacgccattca
ggtttatatttagattttgataaagtctaa
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