Colwellia psychrerythraea: CPS_4237
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Entry
CPS_4237 CDS
T00258
Name
(RefSeq) RecQ domain protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cps
Colwellia psychrerythraea
Pathway
cps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPS_4237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cps03019
]
CPS_4237
03400 DNA repair and recombination proteins [BR:
cps03400
]
CPS_4237
Enzymes [BR:
cps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPS_4237
Messenger RNA biogenesis [BR:
cps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPS_4237
DNA repair and recombination proteins [BR:
cps03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CPS_4237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
TniB
PAS
Thioredoxin_8
Motif
Other DBs
NCBI-ProteinID:
AAZ27512
UniProt:
Q47WD5
LinkDB
All DBs
Position
complement(4462873..4464945)
Genome browser
AA seq
690 aa
AA seq
DB search
MNNPQDYSHKECLKASLLETFGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLT
ALHLPHLTLVVSPLLALMKDQLSFLASKGIKAASIDSTLKGNEAQTVMAGVRDGDIKVLM
VSVERFKNERFRQFIESVPVSMLVVDEAHCISEWGHNFRPDYLKLPSYCQALNISLVLLL
TATATRKVKQDMAAKFAIRDEHIVQTGFYRSNLDLSVLPVTQAHKNKQLEQIISAQQGAG
IVYVTLQHSAETVAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATIAFGMG
IDKSNIRFVIHYDLPKSIENYSQEIGRAGRDGLPSQCFTLANLDGLNTVENFVYGDTPEF
TGIEMLLNTIKSEVITSTHVGISDNRSEGKWELQILQLSNAVNIKQLPLKTLLVQLELAG
VIEPLYAYFADFKIKLLKPKAEIINSFNDQRKDFLQRIFNATDFKKVWGSLNFDTLLQDQ
SIERNRVIAALEYLQEQQLIVLETKGMTEVFNIKLNELADPSLCQTLSNYFKDNEEKEIK
RIATLVRFFQLDTCLTVNLARYFDDTSFDDKRFDGNSSDNNSLDSARNSGTVPQCGHCSV
CRGQVAVLEHSQAQIPWPSDEALKQGMTELAERLSGKINQPLSIESFCRFFAGMSVPLFG
RNKVRQLSGFGVCEQQRYQAILEKLASLSK
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgaataacccacaagattactctcataaagaatgtcttaaagcatcacttctcgagacc
tttggcttcgatggctttcgccccgggcaagagcagaccattacgcaattgcttaaaggc
caatcaagtttgtctatattcccgacaggctcgggtaagtcgttatgttatcagttaact
gcactgcatttaccgcatttaaccttagtggtatcgcctttattagctttgatgaaagat
caattgtcgtttcttgcaagcaaaggtattaaggcggcaagtattgattcgaccttaaaa
ggcaacgaagcacaaaccgtcatggcaggtgtgcgcgatggcgatattaaagtattaatg
gtgtcagttgagcgttttaagaatgaacgctttagacagtttattgaatctgtacctgtt
tctatgctggtggttgatgaagcgcattgtatttctgagtgggggcataattttagaccc
gattatttaaagctaccgagttattgccaagcgttgaatatttcattagtgttgttactt
accgcgacggcaacgcgtaaagtaaaacaagatatggcagctaagtttgctattcgagat
gaacatattgtgcaaacaggcttttatcgatctaaccttgatttaagtgtgctacctgtt
acgcaagcgcataaaaacaagcaacttgagcaaatcatttctgctcaacaaggtgctggt
attgtttatgttaccttgcaacattcagctgaaacagtcgcgcaatatttaaaacagcaa
ggcatcaatgcttgtgcttaccatgctggttttgacagtgatacgcgcagtcaaattcaa
caagactttatggcaggtaaaatacaggttattgtcgcgactattgcctttggtatgggc
attgataaaagtaatatacgttttgttattcattatgacttgccaaagtctatagaaaac
tacagccaagaaataggacgagcagggcgagatgggctgccttcgcagtgttttacctta
gctaatcttgatggcttaaataccgttgaaaactttgtttacggagatacacctgagttt
accggcattgaaatgttattaaatacaataaaatcagaggtaataacaagcactcacgta
ggcataagtgacaatcggtctgaaggaaagtgggagttacaaatattgcagttgtctaat
gctgttaatattaaacaacttccgctaaaaaccctattagtacagttagagttagcgggc
gtgattgaaccactttatgcttactttgctgactttaaaattaaactattaaaacctaaa
gctgaaattatcaatagttttaatgatcaacgtaaagactttttacaacgtatctttaat
gctacagactttaaaaaagtctggggtagtttgaattttgatactttactgcaagatcaa
agtattgaacgtaatcgtgttatagccgctcttgaatacctacaagaacaacaattgata
gtgcttgaaactaaaggtatgactgaggtatttaatataaagctgaatgaattggcagat
cctagtttgtgccaaacactcagtaattattttaaagataatgaagaaaaagaaattaaa
cgtatcgccactttagtacgttttttccagctcgatacttgtttaacggtaaatttggcg
cgctactttgatgatactagtttcgatgataaaaggtttgacggtaatagctccgataat
aatagtctcgattcagctcgcaattcaggaacagtcccacaatgtggtcactgtagtgtt
tgtcgtggtcaagtggcagtacttgagcattctcaagctcagatcccatggccgagtgat
gaagccttaaagcagggcatgacggaattggctgaacgacttagcggaaaaataaatcag
ccattatcgattgaaagtttttgccgattttttgctggtatgtcagtgccattgtttggt
cgcaataaagtaagacaattatctggctttggcgtgtgcgaacagcaacgataccaagct
atacttgaaaaactggccagtttaagcaagtaa
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