Chlamydia psittaci NJ1: B712_0269
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Entry
B712_0269 CDS
T02252
Name
(GenBank) vacB and RNase II 3'-5' exoribonucleases family protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cpsn
Chlamydia psittaci NJ1
Pathway
cpsn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpsn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B712_0269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpsn03019
]
B712_0269
03016 Transfer RNA biogenesis [BR:
cpsn03016
]
B712_0269
Enzymes [BR:
cpsn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
B712_0269
Messenger RNA biogenesis [BR:
cpsn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B712_0269
Transfer RNA biogenesis [BR:
cpsn03016
]
Prokaryotic type
tRNA degradation factors
B712_0269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
Motif
Other DBs
NCBI-ProteinID:
AFS27790
LinkDB
All DBs
Position
complement(253735..255780)
Genome browser
AA seq
681 aa
AA seq
DB search
MKRIRKKRPQSFRRNSKQILISGVLFVHGKKGFGFVTPDHPEEYPFDIFIPARDLKGALD
GDHVVVSLFPNSKEGEKRKGVIHQVISRGKTVLLGTITSLIDASTAFVCVNALGPEIPVK
AKLIPKRDYKIGDRLLLSTPVWKAKPESKEPPPLEMLEFIGNISNAKSDFPCIKAEYGIQ
EEFPEAVIEETNHFSQKHISQALRSRKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNYI
LGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAVS
VFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVENKQPHPIAKTLLAMAELSEKFSD
IREKRGCIRLVLPSFTMSLDNLQEPVNLIETRQTLSHKLIEEFMLKANEVVAYHISHQGV
SLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGHPLEPILHSQF
VRSMKTASYSTENKGHYGLKLDFYTHFTSPIRRYIDLIVHRLLFNPMSIEETRLEHIVRA
CSTQERIAAKSEFAFETLKKNRFLHKFLTEQPDSIYQAYIITINPEGLSFTVPEFCQEGF
IPSAQLPKEFSLKKKTSPDDLPPKMRPGAPIKVKLSEVNLLNQVITWSLVTKTSNTIKKS
PASTKKTKEKKPRTRRKRNTE
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
gtgaagagaatcagaaaaaaacgaccacaaagctttagaagaaactcgaaacaaatatta
atttccggcgtcctatttgttcatggaaaaaaaggtttcggatttgttacacccgaccac
ccagaagaatatccttttgatatttttattcccgcaagagatcttaaaggagccttagat
ggagatcacgttgtcgtctctcttttccccaattctaaagaaggagaaaaaagaaaagga
gtcattcaccaagtcatctctagaggcaaaactgttcttttaggaacaataacctcactc
attgacgcctcaacagcgttcgtctgtgtgaatgctttgggtccagaaatccctgtaaaa
gcaaaacttattcctaaacgtgattataaaatcggcgatcgtttactactcagtacgcct
gtatggaaggcaaaacctgaatccaaagaaccccctccgttggaaatgctcgaatttatt
gggaatatctccaacgctaagtccgatttcccctgcataaaagctgaatatgggattcaa
gaagaattcccagaagctgttatcgaagaaacaaaccatttctcacaaaaacacattagc
caagcactaagatcacgaaaagatcttcgcgatctcctatgctttactattgactcaata
actgcaaaagacttcgatgatgccgtatccttaacctatgacaataacgataattacatc
cttggcgtccatattgcggatgtctcccactacgtaacacctcactccgctctagatcaa
gaagcaagcaaaagatgtaattctatctactttcctgggaaagtgattcctatgctcccc
cccgctctttcggataatctctgcagtttaaaacctaacgtcgatagactcgccgtttct
gtgttcatgacgtttacaaaatccggtcatttatccgattacgaaatattccgtagtgta
atccgtagtaaatatcgcatgacctatgatgaagtggacgagatcgtagaaaataaacag
ccccaccctatagcaaaaactcttctcgctatggcagaactcagcgaaaaattctctgat
atcagagaaaaacgtgggtgcatacgtcttgttcttccttcattcaccatgtctctagat
aacctacaagaacctgtaaatcttatagaaacacgacaaacgctatcacataaactcatc
gaagagtttatgctcaaagctaatgaagtcgttgcttatcatatttcccaccaaggtgtt
tctctgccatttagaatccatgaatctcctaatgatgagagtttgctctctttccaagag
atcgccaaagctatgggatttgatattatcatgaccccagctcaagaacctgattttcaa
tacctattacaagagagctctgcaggacatcctctagagcccattctacattcacaattt
gttcgtagtatgaaaaccgcctcatactcaaccgaaaataaaggtcattatggtcttaaa
ttggatttctatacccacttcaccagccccatccgtcgctatatcgatcttattgttcat
agactcctcttcaaccccatgtctatagaagaaacccgtctagaacatattgtaagagca
tgctctactcaagaacgtatagccgcaaaatctgaatttgcttttgaaacccttaaaaaa
aatcgttttttacataagttcttaacagaacaacccgactccatttatcaagcttacatc
atcacaatcaatcctgaaggtctctcatttaccgttccggaattttgccaagaaggattt
attccatccgcacaattacccaaagaattctctttgaaaaagaaaacatcccccgatgat
ctacctcctaaaatgcgtccaggagcccccataaaagtcaaactctctgaggtaaatctc
ctcaatcaagtgattacttggtcattagtaaccaaaacatcaaacacaataaaaaaatca
ccagcgagcacgaaaaaaactaaggagaagaaacctagaactagaagaaaaaggaataca
gaataa
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