KEGG   Capsella rubella (pink shepherd's-purse): 17892271
Entry
17892271          CDS       T02984                                 
Name
(RefSeq) methyl-CpG-binding domain protein 4-like protein isoform X1
  KO
K10801  methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    17892271
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:crb03036]
    17892271
   03400 DNA repair and recombination proteins [BR:crb03400]
    17892271
Chromosome and associated proteins [BR:crb03036]
 Eukaryotic type
  Heterochromatin formation proteins
   MBPs (metylated DNA binding proteins)
    17892271
DNA repair and recombination proteins [BR:crb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     17892271
SSDB
Motif
Pfam: HhH-GPD
Other DBs
NCBI-GeneID: 17892271
NCBI-ProteinID: XP_006297652
UniProt: R0HYC9
LinkDB
Position
Unknown
AA seq 456 aa
MVPPVIYTYARRRSRRLGSDDDSSVMMTPRRPDSDIIEVCDENRSISLFEDGEDYDDRIR
VLGCIAETETRHGSSNLLLQCHDDVCCLDKEKSDSFVSSSRRNLDDFLSGCSYKGVRTRK
RDAFGSETKSNLVSPQIDVDDVVSESHAGVRRVSPYFQGSTVSQQSKEGCDSHSVSSQSG
RNCRKRCSRVQAKVPRVSPYFQASAISQCDSDIVSSQSGGSYRRDSSKHQAKVRRVSRYF
QASADSEQPNPPRDLRKYFKVVKVSRYFHDVSADGIQVADSQKEKSRRVRKTPVVSPSLS
PSQKTDEAYLRKTPDNTWVPPRSPCNLLQEDHWHDPWRVLVICMLLNKTSGAQTRGVISD
LFTLCPDAKTATEVEEKEIESLIKPLGLQKKRAKMIQRFSLEYLNESWTHVTQLHGIGKY
AADAYAIFCNGNWDRVKPSDHMLNYYWEFLRIRYKL
NT seq 1371 nt   +upstreamnt  +downstreamnt
atggttcctcctgtaatttatacgtatgcgcgaaggagaagtcggagacttgggagcgac
gatgatagttcagtgatgatgactcctcggagacccgactccgatattattgaggtatgt
gatgagaatcgctcgattagtttatttgaggatggggaggactatgatgatcgaattcga
gttttgggttgcattgctgagactgaaactcgacatggttcaagtaatttgcttcttcaa
tgtcatgatgatgtttgttgcctcgacaaggagaagagcgatagctttgtttcatctagt
agaagaaatttggatgattttttatctgggtgctcttataagggtgtgaggactaggaaa
agagatgcatttggaagtgaaacaaagagtaatcttgtttctcctcaaattgatgttgat
gatgttgtttctgaatctcatgctggtgtaagaagagtttctccatacttccaggggtct
actgtgtcacaacagtccaaagaagggtgtgattctcatagtgtttcctctcaaagtgga
agaaattgtaggaaaagatgcagcagagttcaagctaaagtccctagagtttctccatac
ttccaggcatctgctatttcacagtgtgattctgacattgtttcttctcaaagtggagga
agttataggagagatagcagcaaacatcaagctaaggtcagaagagtttcccgttatttc
caggcgtcagctgattcagaacagccaaacccgccaagggatttgcgcaagtattttaaa
gttgtgaaagtttcaagatatttccatgatgtgtctgcggatggaattcaagttgctgat
tcacaaaaggagaaatctaggagggtgaggaaaactcccgttgtgagcccttcactatcg
ccttctcagaagacggatgaggcatacctgcgcaaaacgccagataacacatgggtgcct
ccacgctctccgtgtaatttacttcaagaagatcattggcatgatccatggcgggtgcta
gttatatgtatgcttctcaacaaaacatctggtgcacagacgcggggagtgatatcagac
ttgttcacattgtgtcctgatgcaaagactgcaacagaagttgaagaaaaggagatagag
agtctaataaaacctctcggactacaaaagaagagagccaaaatgattcaacggttttct
ctcgagtatcttaatgagagctggactcatgtcactcaactgcatggcattggaaagtat
gcagcggatgcgtatgcgatattctgtaacgggaactgggatcgcgtgaagcctagtgac
catatgctaaactattactgggaattcctcaggatccggtataaactatga

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