KEGG   Capsella rubella (pink shepherd's-purse): 17895349
Entry
17895349          CDS       T02984                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    17895349
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crb03021]
    17895349
Enzymes [BR:crb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     17895349
Transcription machinery [BR:crb03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     17895349
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 17895349
NCBI-ProteinID: XP_023643709
LinkDB
Position
Unknown
AA seq 1456 aa
MEDDYEELQVPEATLTSIGFSISNNTDREKMAVLKIESANMVTDSRLGLPNPDAICRTCG
SKDRKVCEGHFGVVNFQYAIINPYFLKEIAALLNKICPGCKYIKKKQFQINGEQPHRCRY
CTTNTSYPPVKFRVTTKEVFRRSGIVVEVNEESLIKLKKQGTKTLPLDYWSFVPKDSNID
ESCLKETKRILTHAQVYALLYGIDERLIKKDIPMFDSLSLASFPVTPNGYRVTEIVHQSN
GARLVFDERTRIYKRLVGFEGNTLELSSRVVECMQYSRLFSETVSSSQDSANPYQKKPDT
PKLCGLRFMKDVLLGKRSDHTFRAIVVGDPALKLHEIGIPQTIAERIQVSEILNDWNMER
LSAFVLHKLIALRKREVHVRRGDSLVAIRQIKDLQTGDKISRTLMDGDTVLMNRPPSIHQ
HSLIAMSVKLLPTTSVVSLNPICCNPFRGDFDGDCLHGYIPQSVQAKVELDELVALDKQH
INRQNGRNLLSLGQDSLTGAYLVNVEKNCYLNRAQIQQLQMYCPFQLPPPAIIQASPSST
EPQWTGMQLFGMLFPPGFDYTHPLNDVVVSNGELLASSEGSAWLRDGEGNFIQRLLKHDQ
GKVLEIIHSAQEMLSQWLLMRGLSVSLADLYLSSDPQSRENLTEEIAYGLLEAEQVCNKQ
QLMVESWRDFLAVNGEEKDEEEDSFSDLARFCYERQKSATLSRIAVSAFKDAYRDIQALA
YRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVALSFGFPRKLTCAAWNDPNSP
LRSAKGADKTATESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLPGTLSRRL
MFFMRDIYAAYDGTVRNSFGNQVVQFTYETDGPVEEITGEALGSLSACALSEAAYSALDQ
PVSLLETSPLLNLKNILECGSKKGQREQTISLYLSETLSKKKHGFEYGSLEIKNYLEKLS
FSEIVSTSMIIFSPRTNSKAPLSPWVCHFHISEKVLKRKQLNAESVVSSLNEHYSSRNRE
LKLDLVDLDIQCTNHCPSDDKAMTDDSFCITVTVIEASKPLDLDAVRLILIPFLLDSPVK
GYQEIKKVDILWTDRPKAPKMYGNHLAGELYLRVTMNGDRGKRNCWSSLVETCLPIMDMI
DWSRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKTILREHLLLAADSLSITGEFV
ALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVVDQLQGSIDTLAWGKVPGFG
TGDQFDIIISPKVHGFTTPVDVYELLSSIPPKTVTKRATSSAPKSDKFKVQPFDMLDTAF
PKAFKALNGKGISLFQLRTMFTWEDVENLSRSLKHILNNYEVNAPLSESDENFVSMVLCF
HPNRAEKIGPGFQGIRVGNSKHGDSRCFEVVRIDDTTEDFSYHKCVLGATKIIAPGRMNF
YKSKYLKNGTVQPVAL
NT seq 4371 nt   +upstreamnt  +downstreamnt
atggaagacgattatgaggagcttcaggtccccgaggcaactctaacctcaataggtttt
agcatttcaaataacactgatcgagaaaaaatggctgtcttaaagattgaatcagcgaat
atggtgactgattctcggctagggctaccaaatccggatgctatctgcagaacctgtggc
agcaaagatcgaaaagtctgcgaagggcattttggggttgtaaacttccagtacgcgata
attaacccgtacttcctcaaggagatagctgcattgctaaacaaaatatgtccgggctgt
aaatacattaagaaaaagcagtttcagattaatggagagcagcctcatagatgtagatat
tgcactacgaataccagttatcctccagtgaagtttagggtaactactaaagaagtcttt
aggcgatcgggaatcgttgtcgaagtaaacgaagagagtctgataaaactcaagaaacag
ggaacgaaaacattgccgcttgactattggagttttgtgccaaaagactccaatattgac
gagagctgtctgaaagaaaccaaacgtatcctaacacatgcacaggtttatgctctgtta
tatgggattgatgagaggctcatcaagaaggatatccccatgttcgactctcttagtctg
gcatcttttcctgttacaccaaatggttaccgtgtaaccgaaatcgtccatcaatccaac
ggagctcgactagtatttgatgaacggactcggatctacaagagactagtcggcttcgag
ggaaacacacttgagttgagttctcgtgtggtcgaatgcatgcagtattccagactcttt
tcggaaactgtgtcttcgagtcaagattctgctaatccataccaaaagaaaccagacact
cctaaactatgcggtctaaggttcatgaaagatgtgctgctcggtaaaagaagcgatcat
acattcagggcaatagttgttggtgatccggccttgaagcttcacgagattggcataccc
cagacgatcgcagaaaggattcaagtatcagagattcttaacgactggaatatggaacgg
ctttccgcttttgttttgcacaagctaatcgcgttaaggaagagggaggtgcatgtgaga
agaggagatagcttggtggctattcgacaaatcaaggacctccaaaccggagacaaaatc
tccaggactttgatggatggagacacagtgctgatgaacagaccgccttcgattcatcag
cattcgctcattgcaatgtcagttaaactactcccaacgacttctgttgtctccttaaat
ccgatctgctgtaacccgtttcgtggtgattttgatggagattgtcttcacggttatatt
cctcagtcagttcaagcaaaggtcgagcttgatgagcttgtggctttggataagcagcat
atcaaccgacagaatggtcggaatttgctttctcttggacaagatagcttgacgggagct
tatctggttaatgttgagaaaaattgttatctgaatcgagctcagatccagcagcttcaa
atgtactgcccatttcagcttcctccgcctgcgataatccaagcttctccttcgagcact
gagcctcaatggacaggaatgcagttattcggaatgctttttcctcctgggtttgactac
actcaccctctgaatgatgtggttgtgagtaatggagagcttttagcgtcctctgaagga
tcagcttggcttcgggatggagaagggaattttatccagaggttgctcaaacacgaccaa
gggaaagttcttgaaatcatccattccgctcaagagatgctatctcagtggttgctgatg
cgcggactgagtgtgtccttggcggatttatacctttcttctgatccgcagtctcgggaa
aacttgactgaagagattgcatacggattgctggaagctgaacaagtctgcaacaagcaa
cagctaatggtggaatcttggagagattttcttgcagttaatggggaggaaaaggacgag
gaagaggattcattttcagatttggctcggttctgctatgagagacaaaaatccgctaca
ttaagcagaattgcagttagtgcttttaaggacgcttacagagatattcaggcactggca
tataggtatggcgaccaatccaactcttttttgatcatgtcaaaagccggtagcaaaggg
aatatcgggaagctggttcaacacagcatgtgtatcggtctgcagaattcggcagttgct
ttgtcctttgggtttccgcgcaagctgacttgtgctgcttggaacgacccgaacagtcca
cttcgcagtgcaaagggagcagacaaaaccgctactgagtcatatgttccttatggagtc
attgagaactcgtttcttacgggtctgaatccgttggagtcttttgttcattcggttact
agtcgtgacagctcattcagcggtaatgctgatctcccagggacactgagcagaagatta
atgttcttcatgcgggacatatatgctgcttatgatggcacagtgagaaattcttttggg
aaccaggtagtccagtttacttatgagactgatggtcccgttgaagaaatcactggtgaa
gcacttgggtcactttctgcttgtgcattatctgaggcagcttacagcgcgctggaccag
ccagtcagccttcttgaaacttccccgcttctaaatcttaagaatatcttggagtgtgga
tcaaagaaaggtcaacgagaacagacgatatctttgtatttgtctgaaaccctttcaaag
aaaaagcacgggttcgaatacgggtcactggagatcaagaactacttggagaaacttagt
ttctcagagattgtttcaacatctatgataatattctctccacgcactaactcgaaagca
ccattaagcccgtgggtttgccattttcatatctctgagaaagtactgaagcggaaacaa
cttaacgcagaatctgttgtttcctcattaaacgagcactactcgagcaggaacagagaa
ctgaagcttgatctagttgatttggatatacaatgcacaaaccactgcccttcagacgat
aaggcgatgacggatgatagcttttgcatcacggtgactgtaatcgaagcctcaaaaccg
ttggacctggatgctgttcgtctcattttgatcccttttcttcttgactctcctgtcaaa
ggttaccaagagatcaagaaggttgatatattgtggaccgaccgtccaaaagcgcctaaa
atgtacgggaatcatttggcgggtgagctttacttgagggttacaatgaatggagatcgg
ggaaaaagaaactgttggagctctctcgtagaaacctgtcttcccattatggacatgatc
gactggagccgaagccaccctgataatatccgacaatgctgctcggtttatggaatagac
gctggacggagcatttttgtagcaaatttggagtccgcggtgtcagataccggtaagacg
atactaagagaacatctgcttctcgcagctgatagtctctctattaccggagaatttgtg
gcattaaacgccaaaggttggagtaaacaaagacaggtcgagtccacgcctgcacctttt
actcaagcatgtttctcgagcccaagccaatgctttcttaaagctgctaaggaaggtgtc
gtagatcagctgcaagggtctattgacaccttagcttggggaaaagttcctggttttgga
actggagatcagtttgacatcatcatttcgccaaaggttcatgggtttactacaccagta
gatgtgtatgaacttctgagtagcatacccccaaagacagtgacgaagcgcgcaacaagc
tctgcgcccaaatcagacaaattcaaggtccagccattcgacatgcttgataccgcattc
cctaaagctttcaaggcactcaatgggaaagggatttctctgttccagcttagaacgatg
tttacatgggaggacgttgagaatctttcccggtcattgaaacacatactcaacaattac
gaagtcaatgctcccttgagtgagagtgatgagaattttgtcagcatggttctgtgcttc
caccccaacagagccgagaaaattggaccaggcttccaaggaatccgggtcggtaactcg
aagcacggagattcccgttgctttgaggttgtaagaatagacgatacaacagaagacttt
tcgtatcacaagtgtgtattgggagcaacaaagatcattgccccagggagaatgaacttc
tacaagtcaaagtatcttaaaaatggtacagtccagcccgttgctctctaa

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