Crassostrea gigas (Pacific oyster): 105322125
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Entry
105322125 CDS
T03920
Name
(RefSeq) probable ATP-dependent RNA helicase DDX27
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
crg
Crassostrea gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crg03041
]
105322125
03009 Ribosome biogenesis [BR:
crg03009
]
105322125
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105322125
Spliceosome [BR:
crg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
105322125
Ribosome biogenesis [BR:
crg03009
]
Eukaryotic type
Pre-60S particles
Helicases
105322125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_22
PRK
Motif
Other DBs
NCBI-GeneID:
105322125
NCBI-ProteinID:
XP_011418967
UniProt:
K1PQX1
LinkDB
All DBs
Position
LG6:13950143..13961395
Genome browser
AA seq
740 aa
AA seq
DB search
MADLRKLGFIGTIGDEDEIEVEPESSDSDNEEAQTAKKQKKKKPKKTDNEFNAKFSFTDQ
FDPTASFDFDFALRHAKRKQHATTLDEKIAKVRKQQKKGDKFEVIESDDDLIEEEEDESS
DEEMRTDKIKTKETKKKKGKKKKMDSDSEEEKEKVEFSETVDSYDDKLTFQDMNVSRPLM
KGLGQMNFTKPTPIQAATIPIALLGRDLCACAVTGSGKTVAFMLPILERLMYRTQEEAAT
RVLVLVPTRELAVQVHTVARQLAQYTNIEIVLSAGGLDIKAQEAALRMKPDIVIATPGRL
IDHLHNSPNFSLRNIEILVLDEADRMLDEYFAEQMNEIIRQCAQTRQTMLFSATMSEAVQ
DLASVSLKQPVKIFVNQNTDVALGLRQEFIRIRPNREGDREAIIASLVSRTFRDHCIVFI
QTKKQAHRMHIILGLLGVNVGELHGNLSQAQRLETLKRFKQADVDVLLATDLAARGLDIE
GVKTVINFTMPNTIKHYVHRVGRTARAGKKGRSVTLVGEQERKLLKEVVKKARTPLKTRI
VPQEVISKYRDKISKLEKDLEVIETQEKEESYLRATENQMNKAKKLLEREKNGMDDQKRS
WFQTHKERMQEKEALRLGEFTKLPKNKKANNKEKKKALTSEDRVNHEIQKSHEFAVRSSK
KAFKQKKIRVFKDEDFTNNKQQNKKAKKRKSAFDQELTNTGKSAVKKFRSGPSFKEKKEL
GLLGKKRGKKPVGAKKGKKR
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggacttgaggaaactcggatttattggaaccataggggatgaagacgaaatagaa
gttgaacccgaaagttctgatagtgataacgaagaggctcaaacagcgaagaaacagaag
aagaaaaagccaaagaaaactgataatgaattcaatgccaagttttctttcacagatcag
tttgacccaactgccagctttgactttgattttgcacttcggcatgctaaaaggaaacaa
catgcaacaactcttgatgaaaagatagcgaaagtcagaaaacaacagaaaaagggagac
aagtttgaagtgattgaaagtgatgatgatttaatcgaggaggaggaggatgaaagttca
gatgaggaaatgaggacagacaaaatcaaaacaaaagaaactaaaaagaagaaaggcaag
aagaagaaaatggattctgatagtgaggaggaaaaagagaaagttgagttttcagaaaca
gtggattcctatgatgacaagttgacgtttcaagatatgaatgtttctcgacctcttatg
aagggcctgggacagatgaactttactaagccgacaccaatccaggcagctaccattcct
atcgctctcctaggtcgagacctctgcgcctgtgctgtaactggttcaggtaagacagtt
gcattcatgctgcccatcctggagcgattaatgtacaggacacaggaagaggctgctacc
agagttctggttctggttccaaccagagagttagcagttcaggttcacaccgtagccagg
cagttagctcagtacaccaacattgagatcgtattatcagctggtggattggatatcaaa
gctcaggaggcagctctacgcatgaaaccagatatcgtcatagcaacccctggcagactg
attgaccatttgcacaattctccaaatttctctctcagaaacattgaaattctggtgctg
gatgaggctgacagaatgttggatgagtacttcgcggagcagatgaacgagatcattcgt
cagtgtgcccagaccagacagaccatgctattctcagccacaatgtcagaggctgtgcag
gacctagcctcggtgtcgctgaaacagccagtcaaaatcttcgtcaaccagaatactgac
gtagccctggggctcaggcaggagtttatcaggatacggcctaacagagagggcgacagg
gaggcaatcatagcatcactagtcagccgtaccttccgagaccactgcattgtgttcata
cagacaaaaaagcaggcccacagaatgcacataatcctgggactgctgggtgtcaatgtc
ggggaactacatggcaatctatcccaggctcagagattggaaaccttaaagaggtttaag
caggcagatgtagatgtgttgttggccacagacctggcagcaagaggacttgacattgaa
ggagtcaaaactgtgataaactttaccatgcctaacacaataaaacactacgtccataga
gttggtagaactgctagagcaggaaagaaagggagatcagtgaccctggttggagaacaa
gagaggaaactgctgaaggaggtggtcaaaaaagctaggactccgctcaaaaccaggatc
gtgcctcaagaggtgatatcaaagtacagagataaaatcagcaaattggagaaggacttg
gaagtaatagaaacacaggaaaaagaggagtcctatctaagagcaacagagaaccagatg
aataaggccaagaagttactggagagagagaaaaatggaatggatgaccagaaaagatcc
tggttccaaacccacaaagagagaatgcaggaaaaggaggcattacggctgggagagttc
accaaattacccaaaaataagaaggccaataacaaggagaaaaagaaggctctcacgtca
gaggatagagtgaaccatgaaattcagaagtctcatgagtttgctgtacgtagcagtaaa
aaggccttcaagcaaaaaaagatcagagttttcaaagatgaggacttcactaacaataaa
cagcaaaacaagaaagcaaagaagaggaaatctgcttttgatcaggaactgacaaataca
ggaaagagtgctgtaaagaaattcagatcggggccttcgtttaaagaaaagaaagaactt
ggattattgggtaaaaagaggggcaaaaaaccagtaggggcaaagaaaggcaaaaaaagg
tga
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